Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   AAVC46_RS06795 Genome accession   NZ_CP154913
Coordinates   1307240..1307575 (+) Length   111 a.a.
NCBI ID   WP_095285385.1    Uniprot ID   -
Organism   Bacillus pumilus strain FUA2119     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 1302240..1312575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVC46_RS06775 (AAVC46_06775) gcvT 1302718..1303815 (-) 1098 WP_340973303.1 glycine cleavage system aminomethyltransferase GcvT -
  AAVC46_RS06780 (AAVC46_06780) - 1304377..1306047 (+) 1671 WP_334749719.1 SNF2-related protein -
  AAVC46_RS06785 (AAVC46_06785) - 1306062..1306859 (+) 798 WP_034661279.1 YqhG family protein -
  AAVC46_RS06790 (AAVC46_06790) - 1307042..1307206 (+) 165 WP_003217357.1 anti-repressor SinI family protein -
  AAVC46_RS06795 (AAVC46_06795) sinR 1307240..1307575 (+) 336 WP_095285385.1 helix-turn-helix domain-containing protein Regulator
  AAVC46_RS06800 (AAVC46_06800) - 1307643..1308443 (-) 801 WP_034661283.1 TasA family protein -
  AAVC46_RS06805 (AAVC46_06805) - 1308501..1309073 (-) 573 WP_066031752.1 signal peptidase I -
  AAVC46_RS06810 (AAVC46_06810) tapA 1309125..1309652 (-) 528 WP_307499920.1 amyloid fiber anchoring/assembly protein TapA -
  AAVC46_RS06815 (AAVC46_06815) - 1309951..1310229 (+) 279 WP_307500677.1 DUF3889 domain-containing protein -
  AAVC46_RS06820 (AAVC46_06820) - 1310263..1310457 (-) 195 WP_024718846.1 YqzE family protein -
  AAVC46_RS06825 (AAVC46_06825) comGG 1310516..1310899 (-) 384 WP_340973305.1 competence type IV pilus minor pilin ComGG -
  AAVC46_RS06830 (AAVC46_06830) comGF 1310896..1311396 (-) 501 WP_340973308.1 competence type IV pilus minor pilin ComGF -
  AAVC46_RS06835 (AAVC46_06835) comGE 1311335..1311652 (-) 318 WP_034661291.1 competence type IV pilus minor pilin ComGE -
  AAVC46_RS06840 (AAVC46_06840) comGD 1311636..1312082 (-) 447 WP_066030666.1 competence type IV pilus minor pilin ComGD -
  AAVC46_RS06845 (AAVC46_06845) comGC 1312075..1312368 (-) 294 WP_003217322.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12959.51 Da        Isoelectric Point: 4.9956

>NTDB_id=995306 AAVC46_RS06795 WP_095285385.1 1307240..1307575(+) (sinR) [Bacillus pumilus strain FUA2119]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLHEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWKKNQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=995306 AAVC46_RS06795 WP_095285385.1 1307240..1307575(+) (sinR) [Bacillus pumilus strain FUA2119]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTGTTACACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAAAAAAAA
TCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

93.694

100

0.937

Multiple sequence alignment