Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   AAVC46_RS05655 Genome accession   NZ_CP154913
Coordinates   1102682..1103293 (+) Length   203 a.a.
NCBI ID   WP_060596723.1    Uniprot ID   -
Organism   Bacillus pumilus strain FUA2119     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1097682..1108293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVC46_RS05615 (AAVC46_05615) - 1097846..1098964 (+) 1119 WP_223250492.1 NADH-dependent flavin oxidoreductase -
  AAVC46_RS05620 (AAVC46_05620) - 1099018..1099524 (-) 507 WP_340973185.1 PTS glucose transporter subunit IIA -
  AAVC46_RS05625 (AAVC46_05625) - 1099692..1100111 (+) 420 WP_060596719.1 Hsp20/alpha crystallin family protein -
  AAVC46_RS05630 (AAVC46_05630) - 1100132..1100584 (-) 453 WP_060596720.1 YppG family protein -
  AAVC46_RS05635 (AAVC46_05635) - 1100692..1101063 (-) 372 WP_340973187.1 YppE family protein -
  AAVC46_RS05640 (AAVC46_05640) - 1101122..1101355 (-) 234 WP_340973188.1 DUF5446 family protein -
  AAVC46_RS05645 (AAVC46_05645) sspM 1101552..1101656 (+) 105 WP_012010346.1 acid-soluble spore protein SspM -
  AAVC46_RS05650 (AAVC46_05650) - 1101679..1102635 (-) 957 WP_340973189.1 DUF2515 domain-containing protein -
  AAVC46_RS05655 (AAVC46_05655) recU 1102682..1103293 (+) 612 WP_060596723.1 Holliday junction resolvase RecU Machinery gene
  AAVC46_RS05660 (AAVC46_05660) - 1103337..1106042 (+) 2706 WP_340973190.1 PBP1A family penicillin-binding protein -
  AAVC46_RS05665 (AAVC46_05665) - 1106078..1106587 (-) 510 WP_334749499.1 YpoC family protein -
  AAVC46_RS05670 (AAVC46_05670) nth 1106584..1107246 (-) 663 WP_340973192.1 endonuclease III -
  AAVC46_RS05675 (AAVC46_05675) - 1107264..1107968 (-) 705 WP_307499819.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 23338.36 Da        Isoelectric Point: 8.6133

>NTDB_id=995303 AAVC46_RS05655 WP_060596723.1 1102682..1103293(+) (recU) [Bacillus pumilus strain FUA2119]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLSASDLFFFWERQQ
QNGRKSISKDELMEAGHLMTLGYSPRIDYIKVVETLHFSDESE

Nucleotide


Download         Length: 612 bp        

>NTDB_id=995303 AAVC46_RS05655 WP_060596723.1 1102682..1103293(+) (recU) [Bacillus pumilus strain FUA2119]
ATGATTCGGTATCCAAACGGAAAATCGTATCAGCCCATTCAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCCTC
TTATAGTAACCGCGGGATGACGCTTGAGGCTGACTTAAATGAAACCAACCAGTACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCCGTTCAAATTGTGAATGTGGATTATCCAAAAAGAAGCGCTGCTGTTATCAAAGAAGCCTAT
TTTAAACAATCATCCACAACAGACTATAATGGAGTGTACAAAGGGCGCTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACCACCTCGTTTCCACTCAAAAATTTTCACGATCATCAAATTGAGCATATGAAACAGGTAGAAAAGCAAGGCGGTATTT
GTTTCGTTATTATATCCGCATTTGGCTCCGTTTATTATTTGTCCGCTTCAGATCTCTTTTTCTTCTGGGAGCGGCAGCAG
CAAAACGGCCGGAAATCCATTAGCAAAGACGAATTAATGGAAGCTGGCCACTTAATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGAAAGTGAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.772

99.507

0.724

Multiple sequence alignment