Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AAVC46_RS03385 Genome accession   NZ_CP154913
Coordinates   645701..646603 (+) Length   300 a.a.
NCBI ID   WP_340972702.1    Uniprot ID   -
Organism   Bacillus pumilus strain FUA2119     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 640701..651603
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVC46_RS03365 (AAVC46_03365) - 641354..643093 (+) 1740 WP_345821435.1 glycosyltransferase -
  AAVC46_RS03370 (AAVC46_03370) - 643090..643365 (+) 276 WP_003211418.1 FlhB-like flagellar biosynthesis protein -
  AAVC46_RS03375 (AAVC46_03375) sucC 643552..644712 (+) 1161 WP_012009945.1 ADP-forming succinate--CoA ligase subunit beta -
  AAVC46_RS03380 (AAVC46_03380) sucD 644735..645637 (+) 903 WP_003212080.1 succinate--CoA ligase subunit alpha -
  AAVC46_RS03385 (AAVC46_03385) dprA 645701..646603 (+) 903 WP_340972702.1 DNA-processing protein DprA Machinery gene
  AAVC46_RS03390 (AAVC46_03390) topA 646797..648872 (+) 2076 WP_060596250.1 type I DNA topoisomerase -
  AAVC46_RS03395 (AAVC46_03395) trmFO 648943..650247 (+) 1305 WP_345821438.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  AAVC46_RS03400 (AAVC46_03400) xerC 650310..651227 (+) 918 WP_060596252.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34100.44 Da        Isoelectric Point: 8.8788

>NTDB_id=995298 AAVC46_RS03385 WP_340972702.1 645701..646603(+) (dprA) [Bacillus pumilus strain FUA2119]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETQHFKQDRSLQTIDFTRLKQAEEKEFPIFQHIVQAYLKQNIHM
IPITSPLYPSTLKHIYDPPPVLFLKGNISYLNEEKSLGVVGTRVPSSYGEACVKKIVGELVKEDWTIVSGLAKGIDGLAH
KECIRNKGKTIGIIAGGFQHLYPKEHVQMAQYMGEHHLLLSEHPPYVKPEKWHFPMRNRLISALTSGTIVIQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDPNSTGPARLIQQGAKLVHSTKDILEEFSFRSVQYTELS

Nucleotide


Download         Length: 903 bp        

>NTDB_id=995298 AAVC46_RS03385 WP_340972702.1 645701..646603(+) (dprA) [Bacillus pumilus strain FUA2119]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCTTTGTTAACAAAATGGTGGAA
AGTCGATCCTGAGCTATATATAAATGAAGAAACACAACATTTCAAACAGGATCGATCATTACAAACGATCGACTTTACCC
GCTTAAAACAAGCCGAAGAAAAGGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAACATTCACATG
ATACCCATCACATCACCCTTATATCCCAGCACACTAAAACATATTTATGATCCTCCCCCTGTGTTATTCCTAAAAGGAAA
CATATCATATTTAAATGAAGAAAAAAGTTTAGGTGTAGTAGGCACACGAGTTCCATCGTCTTATGGAGAAGCATGTGTGA
AGAAAATTGTTGGTGAGCTTGTAAAGGAAGATTGGACGATTGTCAGTGGCTTAGCAAAAGGAATCGATGGACTTGCACAT
AAAGAATGCATTAGGAATAAAGGGAAAACCATCGGTATTATAGCAGGCGGATTTCAGCACTTATACCCAAAGGAACATGT
GCAAATGGCTCAATACATGGGAGAGCATCATTTGCTTTTATCCGAGCATCCGCCTTATGTCAAACCAGAAAAGTGGCATT
TCCCAATGAGGAATCGTTTAATTAGTGCGCTGACAAGTGGAACCATCGTGATTCAGTGCAAAGAAAAGAGCGGTTCGCTC
ATTACAGCGTATCAAGCACTTGAGCAAGGCAAAGAGGTATTTGCGGTTGCAGGATCTATCTTTGATCCTAATTCCACAGG
TCCAGCCAGACTTATACAGCAGGGAGCAAAGCTTGTTCATTCAACGAAGGATATTTTAGAGGAATTCTCCTTCCGCAGCG
TTCAATATACTGAACTCTCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

55.052

95.667

0.527
  dprA Lactococcus lactis subsp. cremoris KW2

38.889

96

0.373

Multiple sequence alignment