Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   AAVC46_RS02330 Genome accession   NZ_CP154913
Coordinates   444307..444768 (-) Length   153 a.a.
NCBI ID   WP_012009774.1    Uniprot ID   A0AAE4B719
Organism   Bacillus pumilus strain FUA2119     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 439307..449768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVC46_RS02305 (AAVC46_02305) - 439915..440799 (+) 885 WP_034662794.1 cation diffusion facilitator family transporter -
  AAVC46_RS02310 (AAVC46_02310) - 440862..441014 (-) 153 WP_162839369.1 hypothetical protein -
  AAVC46_RS02315 (AAVC46_02315) - 441316..441855 (+) 540 WP_060596139.1 RDD family protein -
  AAVC46_RS02320 (AAVC46_02320) - 441981..443291 (+) 1311 WP_334748851.1 MFS transporter -
  AAVC46_RS02325 (AAVC46_02325) - 443365..444273 (+) 909 WP_034662787.1 chemotaxis protein -
  AAVC46_RS02330 (AAVC46_02330) kre 444307..444768 (-) 462 WP_012009774.1 YkyB family protein Regulator
  AAVC46_RS02335 (AAVC46_02335) - 445061..445262 (-) 202 Protein_445 AraC family transcriptional regulator -
  AAVC46_RS02340 (AAVC46_02340) - 445473..445688 (-) 216 WP_307499544.1 hypothetical protein -
  AAVC46_RS02345 (AAVC46_02345) - 445990..447267 (-) 1278 WP_307499545.1 MFS transporter -
  AAVC46_RS02350 (AAVC46_02350) - 447341..447838 (-) 498 WP_282068340.1 L,D-transpeptidase family protein -
  AAVC46_RS02355 (AAVC46_02355) - 447995..448852 (-) 858 WP_334748855.1 metallophosphoesterase -
  AAVC46_RS02360 (AAVC46_02360) fadH 448990..449754 (+) 765 WP_034662771.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17741.33 Da        Isoelectric Point: 10.2452

>NTDB_id=995295 AAVC46_RS02330 WP_012009774.1 444307..444768(-) (kre) [Bacillus pumilus strain FUA2119]
MDDYAHTKDIEPTAENIAKAIYTVNRHAKTAPNPKFLYLLKKRALQKLLQEGKGRKVGLHFSNNPKYSQQQSDVLIEIGD
YYFHLPPTKEDFEFLPHLGNLNQSYRNPKANMSLNRAKQLLQTYVGLKEKPTATKQKSHYTKPVFKRLGESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=995295 AAVC46_RS02330 WP_012009774.1 444307..444768(-) (kre) [Bacillus pumilus strain FUA2119]
ATGGACGATTATGCTCATACTAAAGACATAGAACCTACAGCAGAAAACATCGCAAAAGCCATTTATACCGTTAACCGCCA
TGCTAAAACCGCACCAAATCCCAAGTTTCTTTATCTTTTGAAAAAACGTGCGCTGCAAAAACTATTGCAAGAAGGTAAAG
GAAGAAAAGTGGGCCTACATTTCTCTAACAATCCCAAATATAGTCAACAACAGTCCGACGTGCTGATTGAAATTGGAGAT
TATTATTTTCACCTGCCACCAACCAAAGAAGACTTCGAATTTTTGCCACACTTAGGAAATTTAAATCAATCATATCGCAA
TCCGAAAGCGAATATGTCATTAAACCGAGCAAAGCAGCTACTTCAAACGTATGTCGGTTTAAAAGAAAAACCTACCGCCA
CAAAACAAAAATCACATTACACAAAGCCCGTCTTCAAACGACTCGGGGAAAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

76.623

100

0.771

Multiple sequence alignment