Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   AAVC46_RS02145 Genome accession   NZ_CP154913
Coordinates   405080..407182 (-) Length   700 a.a.
NCBI ID   WP_340972525.1    Uniprot ID   -
Organism   Bacillus pumilus strain FUA2119     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 400080..412182
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVC46_RS02120 (AAVC46_02120) - 400668..400910 (+) 243 WP_034662891.1 aspartyl-phosphate phosphatase Spo0E family protein -
  AAVC46_RS02125 (AAVC46_02125) - 400957..402462 (-) 1506 WP_034662888.1 ATP-binding protein -
  AAVC46_RS02130 (AAVC46_02130) - 402668..403123 (+) 456 WP_345821277.1 MarR family transcriptional regulator -
  AAVC46_RS02135 (AAVC46_02135) motB 403153..403917 (-) 765 WP_060596120.1 flagellar motor protein MotB -
  AAVC46_RS02140 (AAVC46_02140) motA 403910..404704 (-) 795 WP_034662877.1 flagellar motor stator protein MotA -
  AAVC46_RS02145 (AAVC46_02145) clpC 405080..407182 (-) 2103 WP_340972525.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  AAVC46_RS02150 (AAVC46_02150) - 407426..408466 (+) 1041 WP_340972528.1 hypothetical protein -
  AAVC46_RS02155 (AAVC46_02155) queC 408746..409402 (+) 657 WP_340972532.1 7-cyano-7-deazaguanine synthase QueC -
  AAVC46_RS02160 (AAVC46_02160) queD 409403..409843 (+) 441 WP_340972535.1 6-carboxytetrahydropterin synthase QueD -
  AAVC46_RS02165 (AAVC46_02165) queE 409836..410567 (+) 732 WP_047202223.1 7-carboxy-7-deazaguanine synthase QueE -
  AAVC46_RS02170 (AAVC46_02170) queF 410583..411080 (+) 498 WP_024426839.1 preQ(1) synthase -
  AAVC46_RS02175 (AAVC46_02175) - 411528..411896 (-) 369 WP_144524762.1 winged helix-turn-helix transcriptional regulator -

Sequence

Protein


Download         Length: 700 a.a.        Molecular weight: 77927.45 Da        Isoelectric Point: 4.9628

>NTDB_id=995294 AAVC46_RS02145 WP_340972525.1 405080..407182(-) (clpC) [Bacillus pumilus strain FUA2119]
MRCQHCQVNEATIRLNMQVNSSRSQMVLCEDCYTSLMEQSKMKMGPQLFGGSSFFSEQAGHAQSGEQPKQKGLLDELGRN
LTDGANAGLIDPVIGRDEEVARVIEILNRRNKNNPVLIGEPGVGKTAIAEGLALKIASGDVPNKLKNKQIYLLDVSSLVA
NTGIRGQFEERMKQLIKELQSRKNIILFVDEIHLLVGAGSAEGSMDAGNILKPALARGELQLVGATTLKEYRQIEKDAAL
ERRFQPVIVDEPTQDEAIEILKGIQDKYESYHGVTYSDEAIQACVQLSSRYIQDRHLPDKAIDLMDEAGSKANLSIDAAS
EDELTNRLTEIAAEKQAALKEEQYEKAAKLRDEEEAIEARLQNKTNDKEHVVTAEAIQAIVEQKTGIPVGKLQADEQTKM
KEIDVRLKARVIGQEHAVEKVAKAVKRSRAGLKSKHRPTGSFLFVGPTGVGKTELSKTLAEELFGSRDAIIRLDMSEYME
KHSVSKLIGSPPGYVGHDEAGQLTEKVRRKPYSIILLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTVIIMTSN
AGSTDKTVKVGFQSDQEEAIEEQSLIDSLSAYFKPEFLNRFDSIIQFDSLDRDDLVKIVDLLLNELSEQLKEQNLTVHVT
KEAKEKIAELGYHPAFGARPLRRTIQEHVEDQMTEILLEEEKLSGFTVDVEDDEIVVKKG

Nucleotide


Download         Length: 2103 bp        

>NTDB_id=995294 AAVC46_RS02145 WP_340972525.1 405080..407182(-) (clpC) [Bacillus pumilus strain FUA2119]
ATGCGTTGTCAACATTGTCAAGTAAATGAAGCAACTATTCGCCTGAATATGCAAGTGAATTCGTCCCGGAGCCAAATGGT
TTTATGTGAAGACTGCTACACCTCTTTGATGGAGCAATCAAAAATGAAAATGGGACCTCAATTGTTCGGGGGAAGCTCAT
TCTTCTCTGAGCAAGCAGGACATGCACAAAGCGGAGAGCAGCCAAAGCAAAAAGGTTTACTCGATGAACTTGGCCGGAAT
TTAACAGATGGCGCAAATGCTGGTTTAATTGATCCAGTCATCGGCCGTGATGAAGAAGTCGCAAGAGTCATTGAAATTTT
AAATAGAAGAAATAAAAATAACCCTGTTCTGATTGGTGAACCAGGTGTTGGGAAAACAGCGATCGCTGAAGGACTCGCAC
TGAAAATTGCAAGTGGCGATGTACCAAATAAATTAAAGAACAAACAAATCTATTTATTAGATGTCTCCTCCCTTGTAGCG
AATACAGGGATACGTGGTCAATTTGAGGAAAGAATGAAGCAGTTAATTAAAGAGCTGCAAAGCCGTAAAAATATTATCTT
ATTTGTAGATGAAATCCATCTTCTTGTAGGCGCAGGATCTGCCGAAGGGTCAATGGATGCTGGAAACATCTTAAAACCAG
CCCTTGCACGAGGCGAGCTTCAGCTAGTAGGTGCGACGACATTAAAAGAATATCGTCAAATTGAAAAAGATGCCGCCCTT
GAACGACGCTTCCAGCCCGTCATTGTAGATGAACCAACACAAGATGAAGCGATCGAGATTTTAAAAGGCATTCAAGATAA
GTACGAAAGTTATCATGGCGTCACTTATTCAGACGAAGCTATTCAAGCGTGTGTTCAATTATCTTCCCGGTATATTCAAG
ACCGTCATTTGCCGGATAAAGCCATTGATTTAATGGATGAAGCAGGTTCAAAAGCGAACCTCTCCATTGATGCAGCAAGT
GAAGATGAACTAACGAATCGTCTGACAGAAATCGCTGCTGAAAAACAAGCTGCTTTAAAAGAAGAACAATACGAAAAAGC
AGCGAAGCTTCGAGATGAAGAAGAAGCCATTGAAGCAAGACTTCAAAACAAAACAAATGACAAAGAACATGTCGTCACAG
CAGAAGCCATTCAAGCCATTGTGGAACAAAAAACAGGCATCCCTGTCGGCAAACTGCAAGCAGACGAACAAACCAAAATG
AAAGAAATTGACGTCCGCTTAAAAGCACGGGTGATTGGTCAGGAACATGCGGTTGAAAAAGTGGCGAAAGCTGTGAAAAG
AAGCAGAGCCGGCTTAAAATCGAAACATAGACCAACAGGCTCCTTCCTATTCGTTGGACCAACAGGTGTCGGGAAAACCG
AATTGTCAAAAACGCTAGCTGAAGAATTATTCGGTTCAAGAGATGCGATCATCCGTTTAGATATGAGTGAGTACATGGAG
AAACACTCAGTATCCAAGCTCATTGGTTCTCCTCCTGGTTATGTTGGACATGATGAAGCGGGTCAGCTGACGGAAAAAGT
GCGCAGAAAACCATACAGCATCATTTTGCTGGATGAAATCGAAAAAGCACATCCTGATGTGCAGCATATGTTCCTTCAAA
TCATGGAAGATGGCCGGTTAACAGACAGCCAAGGCAGAACCGTCAGCTTTAAAGATACGGTCATCATCATGACAAGTAAC
GCAGGCAGCACAGATAAAACGGTCAAAGTCGGCTTCCAGTCTGATCAGGAAGAAGCGATTGAGGAACAATCACTCATTGA
TTCACTCAGCGCCTATTTCAAGCCAGAATTCTTGAACCGTTTTGACAGCATCATTCAGTTTGACTCATTAGATAGAGATG
ATTTAGTGAAGATTGTGGATCTTCTGCTCAATGAGCTGTCAGAGCAATTAAAAGAGCAAAATTTAACAGTCCATGTGACA
AAAGAAGCGAAAGAAAAAATTGCAGAACTTGGATATCATCCTGCATTTGGTGCTCGTCCACTGCGAAGAACCATTCAAGA
GCATGTTGAAGATCAAATGACGGAAATATTGCTTGAAGAAGAAAAGCTTTCAGGATTTACTGTAGATGTTGAAGATGACG
AAATTGTAGTAAAAAAAGGATAA

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(437-604)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(610-685)

AAA lid domain (AAA_lid_9)

(253-353)

ATPase family associated with various cellular activities (AAA) (AAA)

(116-248)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Lactococcus lactis subsp. cremoris KW2

56.64

100

0.597
  clpE Streptococcus mutans UA159

57.202

100

0.59
  clpE Streptococcus pneumoniae Rx1

55.663

100

0.576
  clpE Streptococcus pneumoniae D39

55.663

100

0.576
  clpE Streptococcus pneumoniae R6

55.663

100

0.576
  clpE Streptococcus pneumoniae TIGR4

55.663

100

0.576
  clpC Bacillus subtilis subsp. subtilis str. 168

53.433

95.714

0.511
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

47.077

92.857

0.437
  clpC Streptococcus thermophilus LMD-9

46.384

90.857

0.421
  clpC Streptococcus thermophilus LMG 18311

46.226

90.857

0.42
  clpC Streptococcus mutans UA159

43.865

93.143

0.409
  clpC Streptococcus pneumoniae TIGR4

45.064

89.714

0.404
  clpC Streptococcus pneumoniae Rx1

45.265

89

0.403
  clpC Streptococcus pneumoniae D39

45.265

89

0.403

Multiple sequence alignment