Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   AAVC46_RS00865 Genome accession   NZ_CP154913
Coordinates   160918..161868 (+) Length   316 a.a.
NCBI ID   WP_340972285.1    Uniprot ID   -
Organism   Bacillus pumilus strain FUA2119     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 155918..166868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVC46_RS00845 (AAVC46_00845) - 157146..157628 (+) 483 WP_060595940.1 hypothetical protein -
  AAVC46_RS00850 (AAVC46_00850) - 157661..159100 (-) 1440 WP_340972280.1 PLP-dependent aminotransferase family protein -
  AAVC46_RS00855 (AAVC46_00855) - 159245..160414 (+) 1170 WP_340972282.1 MFS transporter -
  AAVC46_RS00860 (AAVC46_00860) - 160479..160754 (+) 276 WP_060595943.1 barstar family protein -
  AAVC46_RS00865 (AAVC46_00865) ceuB 160918..161868 (+) 951 WP_340972285.1 ABC transporter permease Machinery gene
  AAVC46_RS00870 (AAVC46_00870) - 161861..162811 (+) 951 WP_044140714.1 iron chelate uptake ABC transporter family permease subunit -
  AAVC46_RS00875 (AAVC46_00875) - 162802..163560 (+) 759 WP_095284989.1 ATP-binding cassette domain-containing protein -
  AAVC46_RS00880 (AAVC46_00880) - 163583..164527 (+) 945 WP_095284990.1 siderophore ABC transporter substrate-binding protein -
  AAVC46_RS00885 (AAVC46_00885) - 164668..165624 (+) 957 WP_106031443.1 LCP family protein -
  AAVC46_RS00890 (AAVC46_00890) - 165693..166055 (-) 363 WP_060595947.1 hypothetical protein -
  AAVC46_RS00895 (AAVC46_00895) - 166214..166831 (+) 618 WP_034663493.1 TVP38/TMEM64 family protein -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34874.27 Da        Isoelectric Point: 9.5167

>NTDB_id=995284 AAVC46_RS00865 WP_340972285.1 160918..161868(+) (ceuB) [Bacillus pumilus strain FUA2119]
MKLYQLSLLFVCLACVSLFVGVQDLSILQMFHLTDEQLHTLVSSRIPRLMSIVLAGMSLSLCGFIMQSMTRNKFVSPTTA
GTMDWAKLGILAAMLVFTHASPLMKMGIAFLFTLAGNLLFLKILRHIKVNDTIYVPLVGLMFGGIVSSISTFIAYKYDLI
QNVSAWLQGDFSLIVQGRYELLYVSVPLLIIAYLYADRFTVAGMGESFAINLGLTYKRVMAVGLVIVSMITSVTILTVGM
LPFLGLIIPNIVSIYCGDHLKKSLPHTALLGAIFVLICDVLGRVIIYPYEISVGLMVGIVGSAIFLYMLLRRKRYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=995284 AAVC46_RS00865 WP_340972285.1 160918..161868(+) (ceuB) [Bacillus pumilus strain FUA2119]
ATGAAGTTGTATCAATTAAGTTTATTATTTGTATGTTTGGCATGTGTATCACTGTTTGTCGGTGTACAGGATCTGTCCAT
TTTACAGATGTTTCATTTAACAGATGAACAATTACATACGTTAGTTTCAAGTCGCATCCCGCGTCTCATGAGTATTGTGC
TTGCTGGCATGAGCCTTAGTTTATGCGGCTTTATTATGCAAAGCATGACGAGGAATAAATTTGTTTCACCAACCACTGCA
GGAACGATGGATTGGGCGAAGCTTGGTATTTTAGCAGCAATGCTTGTTTTTACACATGCGAGCCCGCTCATGAAAATGGG
AATCGCGTTTCTATTTACTTTAGCTGGGAATCTTCTTTTCTTAAAAATCCTGCGGCATATTAAGGTGAACGATACGATCT
ATGTACCGTTAGTCGGCTTAATGTTTGGCGGGATTGTCAGTTCAATATCTACGTTTATAGCCTATAAATATGATCTGATC
CAAAACGTATCTGCATGGCTTCAAGGGGATTTTTCTCTTATTGTTCAGGGGCGTTATGAACTGCTCTATGTGAGTGTTCC
ACTATTGATCATCGCGTATTTATATGCTGACCGCTTTACAGTGGCGGGTATGGGTGAGAGCTTTGCCATCAACTTAGGTT
TAACGTATAAACGTGTGATGGCGGTTGGTTTGGTGATCGTTTCGATGATTACATCTGTCACCATATTAACTGTCGGAATG
TTGCCATTCCTAGGCTTAATCATTCCGAATATTGTATCGATCTACTGCGGCGATCACTTGAAAAAGAGCCTTCCGCATAC
AGCCTTACTAGGAGCCATTTTTGTTCTGATTTGTGATGTGCTCGGAAGGGTGATCATTTATCCATATGAAATTTCAGTTG
GGCTCATGGTAGGCATCGTCGGAAGTGCGATCTTCCTGTACATGTTATTAAGGAGGAAACGCTATGCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

52.159

95.253

0.497

Multiple sequence alignment