Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   AAYR27_RS16455 Genome accession   NZ_CP154912
Coordinates   3209811..3210089 (-) Length   92 a.a.
NCBI ID   WP_024424746.1    Uniprot ID   A0AAP7QQG0
Organism   Bacillus safensis strain FUA2118     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3204811..3215089
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAYR27_RS16435 (AAYR27_16435) ade 3204816..3206546 (-) 1731 WP_268481264.1 adenine deaminase -
  AAYR27_RS16440 (AAYR27_16440) - 3206808..3207476 (-) 669 WP_008345123.1 TrkA family potassium uptake protein -
  AAYR27_RS16445 (AAYR27_16445) - 3207514..3208350 (-) 837 WP_268481267.1 gamma-glutamylcyclotransferase family protein -
  AAYR27_RS16450 (AAYR27_16450) - 3208355..3209665 (-) 1311 WP_214755229.1 ATP-binding protein -
  AAYR27_RS16455 (AAYR27_16455) abrB 3209811..3210089 (-) 279 WP_024424746.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  AAYR27_RS16460 (AAYR27_16460) mreBH 3210365..3211372 (+) 1008 WP_024424745.1 rod-share determining protein MreBH -
  AAYR27_RS16465 (AAYR27_16465) - 3211447..3211578 (+) 132 WP_003210922.1 protein YkpC -
  AAYR27_RS16470 (AAYR27_16470) - 3211686..3212918 (+) 1233 WP_034281621.1 aminopeptidase -
  AAYR27_RS16475 (AAYR27_16475) - 3212954..3214573 (-) 1620 WP_024426884.1 ATP-binding cassette domain-containing protein -
  AAYR27_RS16480 (AAYR27_16480) - 3214717..3214992 (+) 276 WP_034281618.1 hypothetical protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10306.01 Da        Isoelectric Point: 4.6909

>NTDB_id=995262 AAYR27_RS16455 WP_024424746.1 3209811..3210089(-) (abrB) [Bacillus safensis strain FUA2118]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGDKIVLKKYQPEGVCLMTGEITSENHEYGNGQITLSAEGAE
LLLKELQEALQK

Nucleotide


Download         Length: 279 bp        

>NTDB_id=995262 AAYR27_RS16455 WP_024424746.1 3209811..3210089(-) (abrB) [Bacillus safensis strain FUA2118]
TTGAAATCTATCGGAGTCGTAAGAAAAGTAGACGAACTAGGGCGTATTGTGATGCCAATCGAATTGAGAAGAGCACTTGA
TATCGCTATTAAAGACAGTATGGAATTTTTTATAGATGGAGATAAAATCGTCTTGAAAAAATATCAGCCAGAGGGCGTTT
GTCTCATGACTGGTGAGATTACATCAGAGAACCATGAATATGGAAATGGTCAAATTACATTAAGCGCTGAAGGCGCAGAA
CTGCTGTTAAAAGAACTGCAAGAAGCTCTTCAGAAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

54.945

98.913

0.543

Multiple sequence alignment