Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   AAYR27_RS11970 Genome accession   NZ_CP154912
Coordinates   2331642..2331977 (-) Length   111 a.a.
NCBI ID   WP_024422969.1    Uniprot ID   -
Organism   Bacillus safensis strain FUA2118     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2326642..2336977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAYR27_RS11920 (AAYR27_11920) comGC 2326848..2327141 (+) 294 WP_024422977.1 competence type IV pilus major pilin ComGC Machinery gene
  AAYR27_RS11925 (AAYR27_11925) comGD 2327134..2327580 (+) 447 WP_041117975.1 competence type IV pilus minor pilin ComGD -
  AAYR27_RS11930 (AAYR27_11930) comGE 2327564..2327878 (+) 315 WP_305933702.1 competence type IV pilus minor pilin ComGE -
  AAYR27_RS11935 (AAYR27_11935) comGF 2327790..2328317 (+) 528 WP_268480849.1 competence type IV pilus minor pilin ComGF -
  AAYR27_RS11940 (AAYR27_11940) comGG 2328314..2328697 (+) 384 WP_041117969.1 competence type IV pilus minor pilin ComGG -
  AAYR27_RS11945 (AAYR27_11945) - 2328757..2328951 (+) 195 WP_024422974.1 YqzE family protein -
  AAYR27_RS11950 (AAYR27_11950) - 2328986..2329264 (-) 279 WP_061109527.1 DUF3889 domain-containing protein -
  AAYR27_RS11955 (AAYR27_11955) tapA 2329564..2330091 (+) 528 WP_041117967.1 amyloid fiber anchoring/assembly protein TapA -
  AAYR27_RS11960 (AAYR27_11960) - 2330144..2330716 (+) 573 WP_034280218.1 signal peptidase I -
  AAYR27_RS11965 (AAYR27_11965) - 2330774..2331574 (+) 801 WP_034280222.1 TasA family protein -
  AAYR27_RS11970 (AAYR27_11970) sinR 2331642..2331977 (-) 336 WP_024422969.1 transcriptional regulator SinR Regulator
  AAYR27_RS11975 (AAYR27_11975) - 2332011..2332175 (-) 165 WP_075623492.1 anti-repressor SinI family protein -
  AAYR27_RS11980 (AAYR27_11980) - 2332359..2333156 (-) 798 WP_034280228.1 YqhG family protein -
  AAYR27_RS11985 (AAYR27_11985) - 2333171..2334841 (-) 1671 WP_034280230.1 SNF2-related protein -
  AAYR27_RS11990 (AAYR27_11990) gcvT 2335403..2336500 (+) 1098 WP_101676874.1 glycine cleavage system aminomethyltransferase GcvT -

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12978.56 Da        Isoelectric Point: 5.0026

>NTDB_id=995253 AAYR27_RS11970 WP_024422969.1 2331642..2331977(-) (sinR) [Bacillus safensis strain FUA2118]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=995253 AAYR27_RS11970 WP_024422969.1 2331642..2331977(-) (sinR) [Bacillus safensis strain FUA2118]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTTTTAAACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946

Multiple sequence alignment