Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   AAYR27_RS11910 Genome accession   NZ_CP154912
Coordinates   2324740..2325810 (+) Length   356 a.a.
NCBI ID   WP_041117979.1    Uniprot ID   -
Organism   Bacillus safensis strain FUA2118     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2319740..2330810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAYR27_RS11870 (AAYR27_11870) - 2319744..2320997 (+) 1254 WP_056767338.1 MFS transporter -
  AAYR27_RS11875 (AAYR27_11875) - 2321074..2321388 (+) 315 WP_024427984.1 MTH1187 family thiamine-binding protein -
  AAYR27_RS11880 (AAYR27_11880) - 2321613..2321786 (-) 174 WP_003217333.1 DUF2759 domain-containing protein -
  AAYR27_RS11885 (AAYR27_11885) - 2321944..2322582 (+) 639 WP_034280195.1 MBL fold metallo-hydrolase -
  AAYR27_RS11890 (AAYR27_11890) - 2322628..2322870 (-) 243 WP_003217440.1 DUF2626 domain-containing protein -
  AAYR27_RS11895 (AAYR27_11895) - 2323083..2323463 (+) 381 WP_007501232.1 Spx/MgsR family RNA polymerase-binding regulatory protein -
  AAYR27_RS11905 (AAYR27_11905) - 2323687..2324562 (+) 876 WP_024422979.1 STAS domain-containing protein -
  AAYR27_RS11910 (AAYR27_11910) comGA 2324740..2325810 (+) 1071 WP_041117979.1 competence type IV pilus ATPase ComGA Machinery gene
  AAYR27_RS11915 (AAYR27_11915) comGB 2325791..2326831 (+) 1041 WP_326133399.1 competence type IV pilus assembly protein ComGB -
  AAYR27_RS11920 (AAYR27_11920) comGC 2326848..2327141 (+) 294 WP_024422977.1 competence type IV pilus major pilin ComGC Machinery gene
  AAYR27_RS11925 (AAYR27_11925) comGD 2327134..2327580 (+) 447 WP_041117975.1 competence type IV pilus minor pilin ComGD -
  AAYR27_RS11930 (AAYR27_11930) comGE 2327564..2327878 (+) 315 WP_305933702.1 competence type IV pilus minor pilin ComGE -
  AAYR27_RS11935 (AAYR27_11935) comGF 2327790..2328317 (+) 528 WP_268480849.1 competence type IV pilus minor pilin ComGF -
  AAYR27_RS11940 (AAYR27_11940) comGG 2328314..2328697 (+) 384 WP_041117969.1 competence type IV pilus minor pilin ComGG -
  AAYR27_RS11945 (AAYR27_11945) - 2328757..2328951 (+) 195 WP_024422974.1 YqzE family protein -
  AAYR27_RS11950 (AAYR27_11950) - 2328986..2329264 (-) 279 WP_061109527.1 DUF3889 domain-containing protein -
  AAYR27_RS11955 (AAYR27_11955) tapA 2329564..2330091 (+) 528 WP_041117967.1 amyloid fiber anchoring/assembly protein TapA -
  AAYR27_RS11960 (AAYR27_11960) - 2330144..2330716 (+) 573 WP_034280218.1 signal peptidase I -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 40398.79 Da        Isoelectric Point: 9.4061

>NTDB_id=995251 AAYR27_RS11910 WP_041117979.1 2324740..2325810(+) (comGA) [Bacillus safensis strain FUA2118]
MYGIEYLRQELLEEACRMRASDVHIVPKEKEASVSFRVDSDLIQQRTIDKKSGERLIAHFKFLSSMDIGEKRRPQNGSLA
VMLRNGQVFIRMSTLPTVNDESLVIRILPQDHVPKIKHLSLFPKASARLLSFLNHSHGLILFTGPTNSGKTTTLYSLIQF
AKKNFNRNIITLEDPVETRNEEVLQVQVNEKAGITYAAGLRAILRHDPDVIVLGEIRDAETARTAIRAALTGHLVLSTLH
AKNAKGALYRMLEFGVTMNELEQTMVAIAAQRLIELTCPFCGERCQLYCKLNRPIRRTNVFELLFGKELGECIKEAKGEY
AHSSYETLQRLIRKGVALGYLSKNTYHRWVYEEASL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=995251 AAYR27_RS11910 WP_041117979.1 2324740..2325810(+) (comGA) [Bacillus safensis strain FUA2118]
TTGTATGGGATTGAATATTTAAGGCAAGAGCTGCTAGAAGAAGCATGCCGCATGAGGGCTTCTGATGTGCATATTGTGCC
AAAAGAAAAGGAAGCTTCGGTGTCATTTCGTGTTGATTCAGATTTAATCCAGCAGCGAACCATTGATAAAAAAAGCGGAG
AGAGGCTTATTGCACATTTTAAGTTTTTATCTTCTATGGATATCGGGGAGAAAAGGAGGCCGCAAAATGGCTCACTAGCT
GTGATGCTAAGAAACGGTCAAGTGTTTATTCGGATGTCTACCTTGCCGACAGTGAATGATGAGAGCTTAGTGATTAGAAT
TTTACCGCAGGATCATGTTCCGAAAATAAAACATCTATCATTATTTCCGAAAGCCTCAGCCAGATTATTATCCTTTTTAA
ACCACTCGCATGGACTCATTTTATTTACTGGGCCAACAAATTCAGGGAAAACAACAACACTATATTCATTGATCCAGTTT
GCAAAAAAGAATTTTAACCGAAATATTATTACCCTTGAAGATCCTGTCGAAACAAGGAATGAAGAAGTGCTGCAGGTTCA
AGTGAATGAAAAAGCCGGCATCACGTATGCCGCTGGATTACGCGCTATTTTAAGACATGATCCAGATGTGATTGTGCTAG
GAGAAATAAGAGATGCTGAAACGGCCAGAACGGCGATTAGAGCAGCACTGACAGGCCATTTAGTATTGAGTACGCTCCAT
GCAAAAAATGCAAAAGGAGCCCTTTATCGTATGCTTGAATTTGGTGTCACGATGAATGAACTTGAACAAACCATGGTTGC
GATTGCTGCCCAGCGATTAATCGAGCTCACCTGTCCTTTTTGCGGAGAAAGATGTCAGCTTTACTGTAAATTAAATCGAC
CGATCAGACGAACAAATGTATTTGAACTGCTGTTCGGAAAAGAGCTTGGTGAGTGTATCAAGGAGGCTAAAGGAGAATAT
GCTCACTCGTCATATGAAACACTGCAAAGATTAATTCGTAAAGGAGTGGCACTCGGCTATTTATCAAAAAACACTTACCA
TCGCTGGGTTTATGAAGAAGCGAGCCTCTAA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(11-275)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

64.689

99.438

0.643

Multiple sequence alignment