Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   AAYR27_RS11635 Genome accession   NZ_CP154912
Coordinates   2275410..2276180 (+) Length   256 a.a.
NCBI ID   WP_176966981.1    Uniprot ID   -
Organism   Bacillus safensis strain FUA2118     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2270410..2281180
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAYR27_RS11605 (AAYR27_11605) - 2270741..2272828 (+) 2088 WP_186365570.1 HD family phosphohydrolase -
  AAYR27_RS11610 (AAYR27_11610) ybeY 2272829..2273308 (+) 480 WP_024423021.1 rRNA maturation RNase YbeY -
  AAYR27_RS11615 (AAYR27_11615) - 2273286..2273672 (+) 387 WP_024423020.1 diacylglycerol kinase family protein -
  AAYR27_RS11620 (AAYR27_11620) - 2273786..2274184 (+) 399 WP_008356263.1 cytidine deaminase -
  AAYR27_RS11625 (AAYR27_11625) era 2274177..2275082 (+) 906 WP_007501305.1 GTPase Era -
  AAYR27_RS11630 (AAYR27_11630) - 2275231..2275374 (+) 144 WP_003217288.1 YqzL family protein -
  AAYR27_RS11635 (AAYR27_11635) recO 2275410..2276180 (+) 771 WP_176966981.1 DNA repair protein RecO Machinery gene
  AAYR27_RS11640 (AAYR27_11640) glyQ 2276509..2277396 (+) 888 WP_012010611.1 glycine--tRNA ligase subunit alpha -
  AAYR27_RS11645 (AAYR27_11645) glyS 2277389..2279434 (+) 2046 WP_065214625.1 glycine--tRNA ligase subunit beta -
  AAYR27_RS11650 (AAYR27_11650) - 2279602..2280240 (+) 639 WP_024423017.1 helix-turn-helix transcriptional regulator -
  AAYR27_RS11655 (AAYR27_11655) - 2280266..2281087 (+) 822 WP_008342399.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29222.94 Da        Isoelectric Point: 8.9833

>NTDB_id=995250 AAYR27_RS11635 WP_176966981.1 2275410..2276180(+) (recO) [Bacillus safensis strain FUA2118]
MLIKSEGIVLRTTDYGETNKIVTLLTRKHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMIESMRA
IREDLFLTAHAAYMTELMDKGTEEKKPNPYLFELLLQSLRHLNEGTDADIILFIVEVKMLSVMGMKPELDQCVHCGQKEG
QFHFSIRDNGFICQNCFSKDPYKLPLSPAAARLLRLFHYFDLSRLGQVDVKQQTKQEIRQVLDHYYDEYSGLYLKSKKFM
NQMESMKKLMGGENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=995250 AAYR27_RS11635 WP_176966981.1 2275410..2276180(+) (recO) [Bacillus safensis strain FUA2118]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AAAACATGGAAAAATTGGCGTGATGGCAAGAGGCGCTAAAAAATCAAACAGCCGCCTGTCAGCCATAAGCCAGCCGTTTT
TATACGGCACCTTTCTCATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGCGAAATGATTGAAAGTATGCGGGCC
ATTCGGGAAGACTTATTTCTGACCGCACATGCCGCATATATGACGGAATTGATGGATAAAGGGACAGAAGAAAAAAAGCC
AAACCCTTATTTGTTTGAGCTTCTGCTTCAATCTCTGCGTCATCTCAACGAAGGTACAGATGCTGATATTATTTTATTTA
TCGTAGAGGTCAAAATGTTATCAGTGATGGGGATGAAGCCTGAACTTGATCAATGTGTGCACTGTGGTCAAAAAGAAGGG
CAGTTCCATTTCTCAATAAGAGATAACGGCTTCATTTGCCAAAATTGTTTTTCGAAAGATCCATATAAACTGCCCTTATC
CCCCGCAGCTGCAAGGCTGCTCCGTTTGTTTCATTATTTTGATTTATCAAGGCTTGGTCAGGTTGATGTGAAACAGCAGA
CGAAACAAGAAATTCGTCAAGTGCTTGATCACTACTATGACGAATATTCCGGCCTCTATTTAAAATCAAAAAAATTCATG
AATCAGATGGAATCCATGAAAAAGCTAATGGGCGGGGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

74.609

100

0.746

Multiple sequence alignment