Detailed information NTG0995229

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EJ102_RS06905
• Genome accession: NZ_LR130530
• Coordinates: 1442739..1443743 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa isolate paerg003
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1437739..1448743

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EJ102_RS06875 (BANRA_01336)	fghA	1437831..1438682 (+)	852	WP_004345459.1	S-formylglutathione hydrolase	-
EJ102_RS06880 (BANRA_01337)	ispF	1438753..1439226 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
EJ102_RS06885 (BANRA_01338)	truD	1439223..1440290 (+)	1068	WP_004345456.1	tRNA pseudouridine(13) synthase TruD	-
EJ102_RS06890 (BANRA_01339)	surE	1440278..1441027 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
EJ102_RS06895 (BANRA_01340)	-	1441060..1441695 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
EJ102_RS06900 (BANRA_01341)	-	1441741..1442634 (+)	894	WP_003143263.1	peptidoglycan DD-metalloendopeptidase family protein	-
EJ102_RS06905 (BANRA_01342)	rpoS	1442739..1443743 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
EJ102_RS06910 (BANRA_01343)	fdxA	1444169..1444492 (-)	324	WP_003092272.1	ferredoxin FdxA	-
EJ102_RS06915 (BANRA_01344)	mutS	1444559..1447126 (-)	2568	WP_125075372.1	DNA mismatch repair protein MutS	-
EJ102_RS06925 (BANRA_01345)	-	1447252..1448259 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=995229 EJ102_RS06905 WP_003113871.1 1442739..1443743(+) (rpoS) [Pseudomonas aeruginosa isolate paerg003]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=995229 EJ102_RS06905 WP_003113871.1 1442739..1443743(+) (rpoS) [Pseudomonas aeruginosa isolate paerg003]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGTCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATTCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653