Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   AAYR27_RS04005 Genome accession   NZ_CP154912
Coordinates   795790..796080 (+) Length   96 a.a.
NCBI ID   WP_087975202.1    Uniprot ID   -
Organism   Bacillus safensis strain FUA2118     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 790790..801080
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAYR27_RS03990 (AAYR27_03990) - 790974..792176 (-) 1203 WP_101676973.1 G5 and 3D domain-containing protein -
  AAYR27_RS03995 (AAYR27_03995) - 792421..793188 (-) 768 WP_101676972.1 TatD family hydrolase -
  AAYR27_RS04000 (AAYR27_04000) metG 793269..795269 (-) 2001 WP_041115197.1 methionine--tRNA ligase -
  AAYR27_RS04005 (AAYR27_04005) abrB 795790..796080 (+) 291 WP_087975202.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  AAYR27_RS04010 (AAYR27_04010) rsmI 796126..797007 (-) 882 WP_034284141.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  AAYR27_RS04015 (AAYR27_04015) - 796982..797281 (-) 300 WP_034284140.1 GIY-YIG nuclease family protein -
  AAYR27_RS04020 (AAYR27_04020) - 797268..798011 (-) 744 WP_070326877.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  AAYR27_RS04025 (AAYR27_04025) yabA 798067..798420 (-) 354 WP_024425629.1 DNA replication initiation control protein YabA -
  AAYR27_RS04030 (AAYR27_04030) - 798435..799262 (-) 828 WP_024425628.1 stage 0 sporulation family protein -
  AAYR27_RS04035 (AAYR27_04035) holB 799250..800254 (-) 1005 WP_345831946.1 DNA polymerase III subunit delta' -
  AAYR27_RS04040 (AAYR27_04040) - 800266..800706 (-) 441 WP_024425626.1 YaaR family protein -
  AAYR27_RS04045 (AAYR27_04045) - 800719..801048 (-) 330 WP_024425625.1 cyclic-di-AMP receptor -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10853.65 Da        Isoelectric Point: 7.9655

>NTDB_id=995224 AAYR27_RS04005 WP_087975202.1 795790..796080(+) (abrB) [Bacillus safensis strain FUA2118]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=995224 AAYR27_RS04005 WP_087975202.1 795790..796080(+) (abrB) [Bacillus safensis strain FUA2118]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGACGCGTGGTGATTCCAATCGAACTTCGCCGTAC
GTTAGGAATCGCTGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCCTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACAGGTGAAGTATCAGACGATAACCTTAAGCTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938

Multiple sequence alignment