Detailed information
Bioinformatically predicted
Overview
| Name | recF | Type | Machinery gene |
| Locus tag | AAYR28_RS18940 | Genome accession | NZ_CP154909 |
| Coordinates | 3690932..3692044 (+) | Length | 370 a.a. |
| NCBI ID | WP_041105878.1 | Uniprot ID | A0AAP7UIW5 |
| Organism | Bacillus safensis strain FUA2117 | ||
| Function | homologous recombination (predicted from homology) Homologous recombination |
||
Genomic Context
Location: 3685932..3697044
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAYR28_RS18915 (AAYR28_18915) | rnpA | 3686683..3687042 (-) | 360 | WP_101677461.1 | ribonuclease P protein component | - |
| AAYR28_RS18920 (AAYR28_18920) | rpmH | 3687121..3687255 (-) | 135 | WP_073208224.1 | 50S ribosomal protein L34 | - |
| AAYR28_RS18925 (AAYR28_18925) | dnaA | 3687876..3689216 (+) | 1341 | WP_024424073.1 | chromosomal replication initiator protein DnaA | - |
| AAYR28_RS18930 (AAYR28_18930) | dnaN | 3689413..3690549 (+) | 1137 | WP_024424074.1 | DNA polymerase III subunit beta | - |
| AAYR28_RS18935 (AAYR28_18935) | yaaA | 3690700..3690915 (+) | 216 | WP_008360916.1 | S4 domain-containing protein YaaA | - |
| AAYR28_RS18940 (AAYR28_18940) | recF | 3690932..3692044 (+) | 1113 | WP_041105878.1 | DNA replication/repair protein RecF | Machinery gene |
| AAYR28_RS18945 (AAYR28_18945) | - | 3692062..3692307 (+) | 246 | WP_101677460.1 | extracellular matrix/biofilm biosynthesis regulator RemA family protein | - |
| AAYR28_RS18950 (AAYR28_18950) | gyrB | 3692365..3694281 (+) | 1917 | WP_041118480.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
| AAYR28_RS18955 (AAYR28_18955) | gyrA | 3694514..3697018 (+) | 2505 | WP_034283649.1 | DNA gyrase subunit A | - |
Sequence
Protein
Download Length: 370 a.a. Molecular weight: 42559.64 Da Isoelectric Point: 7.3663
>NTDB_id=995218 AAYR28_RS18940 WP_041105878.1 3690932..3692044(+) (recF) [Bacillus safensis strain FUA2117]
MYIQSLALTSYRNYEHTELQFDNKVNVMIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDQDYAKIEGRVIKKNGP
LPMQLVISKKGKKGKVNHIEQQKLSHYVGALNTIMFAPEDLSLVKGSPQIRRRFLDMEIGQVSAVYLHDLSLYQKILSQR
NHYLKQLQTRKQSDQAMLEILTEQLIDAAAKVVKRRLTFTKQLEKWAQPLHFGISRELETLTLQYQTAIEVSEASDLSKI
KNSYEESFQKLREREIDRGVTLWGPHRDDLLFFVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVEGIDHATLKEAEIFRVASGKVID
MYIQSLALTSYRNYEHTELQFDNKVNVMIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDQDYAKIEGRVIKKNGP
LPMQLVISKKGKKGKVNHIEQQKLSHYVGALNTIMFAPEDLSLVKGSPQIRRRFLDMEIGQVSAVYLHDLSLYQKILSQR
NHYLKQLQTRKQSDQAMLEILTEQLIDAAAKVVKRRLTFTKQLEKWAQPLHFGISRELETLTLQYQTAIEVSEASDLSKI
KNSYEESFQKLREREIDRGVTLWGPHRDDLLFFVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVEGIDHATLKEAEIFRVASGKVID
Nucleotide
Download Length: 1113 bp
>NTDB_id=995218 AAYR28_RS18940 WP_041105878.1 3690932..3692044(+) (recF) [Bacillus safensis strain FUA2117]
ATGTACATTCAAAGTCTGGCGTTAACTTCATACCGAAACTATGAACACACCGAGCTTCAATTCGACAATAAGGTGAATGT
CATGATCGGTGAGAATGCCCAAGGTAAAACGAACTTGATGGAAGCGATCTATGTATTGTCGATGGCAAAGTCTCATCGTA
CGTCAAATGATAAAGAACTTATCCGATGGGACCAAGACTATGCTAAAATAGAAGGTAGAGTCATTAAAAAAAATGGTCCA
CTCCCAATGCAGCTCGTGATCTCAAAAAAAGGGAAAAAGGGCAAGGTCAATCACATTGAACAACAGAAGCTCAGTCATTA
TGTTGGTGCATTAAACACCATCATGTTTGCGCCAGAGGACTTAAGTCTTGTGAAGGGCAGCCCGCAAATCCGCAGAAGAT
TCCTCGACATGGAGATTGGACAAGTTTCTGCTGTCTACTTGCATGATTTATCGCTCTATCAAAAAATCCTTTCTCAGCGG
AATCATTACTTGAAACAATTGCAGACAAGAAAGCAATCGGATCAAGCGATGCTGGAGATTTTAACAGAGCAGTTGATTGA
TGCGGCAGCGAAAGTGGTCAAAAGACGACTGACTTTTACGAAACAGCTCGAAAAATGGGCGCAGCCGCTGCATTTTGGGA
TTTCTAGAGAGCTAGAAACACTCACGCTCCAATACCAGACGGCAATAGAGGTATCAGAAGCGTCAGACTTGTCGAAAATA
AAGAATAGCTATGAAGAATCGTTTCAGAAACTAAGAGAGAGAGAAATAGACCGAGGGGTGACACTGTGGGGACCTCACAG
AGATGACCTGCTTTTCTTTGTGAATGGCCGGGATGTTCAGACATATGGCTCTCAAGGGCAGCAAAGAACAACAGCTCTTT
CACTAAAGCTGGCAGAAATTGATCTGATACATGAAGAAATCGGAGAATATCCTATTCTTCTACTTGATGATGTGTTATCT
GAACTTGATGATTACAGACAGTCTCATTTGCTCCATACCATTCAGGGGCGAGTACAGACCTTCGTCACCACAACAAGTGT
TGAAGGCATCGATCACGCCACCCTGAAAGAAGCGGAAATTTTCAGAGTAGCCAGTGGAAAAGTAATTGACTGA
ATGTACATTCAAAGTCTGGCGTTAACTTCATACCGAAACTATGAACACACCGAGCTTCAATTCGACAATAAGGTGAATGT
CATGATCGGTGAGAATGCCCAAGGTAAAACGAACTTGATGGAAGCGATCTATGTATTGTCGATGGCAAAGTCTCATCGTA
CGTCAAATGATAAAGAACTTATCCGATGGGACCAAGACTATGCTAAAATAGAAGGTAGAGTCATTAAAAAAAATGGTCCA
CTCCCAATGCAGCTCGTGATCTCAAAAAAAGGGAAAAAGGGCAAGGTCAATCACATTGAACAACAGAAGCTCAGTCATTA
TGTTGGTGCATTAAACACCATCATGTTTGCGCCAGAGGACTTAAGTCTTGTGAAGGGCAGCCCGCAAATCCGCAGAAGAT
TCCTCGACATGGAGATTGGACAAGTTTCTGCTGTCTACTTGCATGATTTATCGCTCTATCAAAAAATCCTTTCTCAGCGG
AATCATTACTTGAAACAATTGCAGACAAGAAAGCAATCGGATCAAGCGATGCTGGAGATTTTAACAGAGCAGTTGATTGA
TGCGGCAGCGAAAGTGGTCAAAAGACGACTGACTTTTACGAAACAGCTCGAAAAATGGGCGCAGCCGCTGCATTTTGGGA
TTTCTAGAGAGCTAGAAACACTCACGCTCCAATACCAGACGGCAATAGAGGTATCAGAAGCGTCAGACTTGTCGAAAATA
AAGAATAGCTATGAAGAATCGTTTCAGAAACTAAGAGAGAGAGAAATAGACCGAGGGGTGACACTGTGGGGACCTCACAG
AGATGACCTGCTTTTCTTTGTGAATGGCCGGGATGTTCAGACATATGGCTCTCAAGGGCAGCAAAGAACAACAGCTCTTT
CACTAAAGCTGGCAGAAATTGATCTGATACATGAAGAAATCGGAGAATATCCTATTCTTCTACTTGATGATGTGTTATCT
GAACTTGATGATTACAGACAGTCTCATTTGCTCCATACCATTCAGGGGCGAGTACAGACCTTCGTCACCACAACAAGTGT
TGAAGGCATCGATCACGCCACCCTGAAAGAAGCGGAAATTTTCAGAGTAGCCAGTGGAAAAGTAATTGACTGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| recF | Bacillus subtilis subsp. subtilis str. 168 |
83.469 |
99.73 |
0.832 |