Detailed information NTG0995197

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EJN10_RS26165
• Genome accession: NZ_LR130528
• Coordinates: 5496192..5497196 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa isolate paerg000
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 5491192..5502196

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EJN10_RS26145 (BANRA_05102)	-	5491674..5492681 (+)	1008	WP_003092265.1	TolB family protein	-
EJN10_RS26155	mutS	5492807..5495374 (+)	2568	Protein_5062	DNA mismatch repair protein MutS	-
EJN10_RS26160 (BANRA_05105)	fdxA	5495441..5495764 (+)	324	WP_003092272.1	ferredoxin FdxA	-
EJN10_RS26165 (BANRA_05106)	rpoS	5496192..5497196 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
EJN10_RS26170 (BANRA_05107)	-	5497301..5498194 (-)	894	WP_003115226.1	peptidoglycan DD-metalloendopeptidase family protein	-
EJN10_RS26175 (BANRA_05109)	-	5498240..5498874 (-)	635	Protein_5066	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
EJN10_RS26180 (BANRA_05110)	surE	5498907..5499656 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
EJN10_RS26185 (BANRA_05111)	truD	5499644..5500711 (-)	1068	WP_023114621.1	tRNA pseudouridine(13) synthase TruD	-
EJN10_RS26190 (BANRA_05112)	ispF	5500708..5501181 (-)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
EJN10_RS26195 (BANRA_05113)	fghA	5501252..5502103 (-)	852	WP_003113869.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=995197 EJN10_RS26165 WP_003113871.1 5496192..5497196(-) (rpoS) [Pseudomonas aeruginosa isolate paerg000]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=995197 EJN10_RS26165 WP_003113871.1 5496192..5497196(-) (rpoS) [Pseudomonas aeruginosa isolate paerg000]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCCCCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGACCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653