Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   AAYR28_RS11335 Genome accession   NZ_CP154909
Coordinates   2221622..2221957 (+) Length   111 a.a.
NCBI ID   WP_024422969.1    Uniprot ID   -
Organism   Bacillus safensis strain FUA2117     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2216622..2226957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAYR28_RS11315 (AAYR28_11315) gcvT 2217099..2218196 (-) 1098 WP_120208207.1 glycine cleavage system aminomethyltransferase GcvT -
  AAYR28_RS11320 (AAYR28_11320) - 2218758..2220428 (+) 1671 WP_034280230.1 SNF2-related protein -
  AAYR28_RS11325 (AAYR28_11325) - 2220443..2221240 (+) 798 WP_034280228.1 YqhG family protein -
  AAYR28_RS11330 (AAYR28_11330) - 2221424..2221588 (+) 165 WP_075623492.1 anti-repressor SinI family protein -
  AAYR28_RS11335 (AAYR28_11335) sinR 2221622..2221957 (+) 336 WP_024422969.1 transcriptional regulator SinR Regulator
  AAYR28_RS11340 (AAYR28_11340) - 2222025..2222825 (-) 801 WP_034280222.1 TasA family protein -
  AAYR28_RS11345 (AAYR28_11345) - 2222883..2223455 (-) 573 WP_034280218.1 signal peptidase I -
  AAYR28_RS11350 (AAYR28_11350) tapA 2223508..2224035 (-) 528 WP_120208209.1 amyloid fiber anchoring/assembly protein TapA -
  AAYR28_RS11355 (AAYR28_11355) - 2224335..2224613 (+) 279 WP_061109527.1 DUF3889 domain-containing protein -
  AAYR28_RS11360 (AAYR28_11360) - 2224648..2224842 (-) 195 WP_120208337.1 YqzE family protein -
  AAYR28_RS11365 (AAYR28_11365) comGG 2224902..2225285 (-) 384 WP_345808828.1 competence type IV pilus minor pilin ComGG -
  AAYR28_RS11370 (AAYR28_11370) comGF 2225282..2225809 (-) 528 WP_326487288.1 competence type IV pilus minor pilin ComGF -
  AAYR28_RS11375 (AAYR28_11375) comGE 2225721..2226035 (-) 315 WP_208946439.1 competence type IV pilus minor pilin ComGE -
  AAYR28_RS11380 (AAYR28_11380) comGD 2226019..2226465 (-) 447 WP_197172667.1 competence type IV pilus minor pilin ComGD -
  AAYR28_RS11385 (AAYR28_11385) comGC 2226458..2226751 (-) 294 WP_024422977.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12978.56 Da        Isoelectric Point: 5.0026

>NTDB_id=995191 AAYR28_RS11335 WP_024422969.1 2221622..2221957(+) (sinR) [Bacillus safensis strain FUA2117]
MIGQRIKQYRNEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLNEKDETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQIWRKKQEEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=995191 AAYR28_RS11335 WP_024422969.1 2221622..2221957(+) (sinR) [Bacillus safensis strain FUA2117]
TTGATTGGCCAGCGTATTAAACAATACCGCAATGAAAAAGGCTACTCACTATCAGAACTGGCCGAAAAGGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAAAGAAACTTGCAAACAAACCCCTCCATTCAATTTCTTGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACACTTTTAAACGAAAAAGATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAAAAA
CTAGTTCGAGATGCAATGACATCAGGGGTTTCGAAAAAGCAATTTCGTGAATTTTTAGATTATCAAATCTGGAGAAAAAA
GCAAGAAGAGGAGTAA

Domains

Predicted by InterproScan.

Anti-repressor SinI (SinI)

(74-101)

Helix-turn-helix (HTH_3)

(6-58)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

94.595

100

0.946

Multiple sequence alignment