Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AAYR28_RS11150 Genome accession   NZ_CP154909
Coordinates   2189453..2191186 (-) Length   577 a.a.
NCBI ID   WP_034280267.1    Uniprot ID   -
Organism   Bacillus safensis strain FUA2117     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2184453..2196186
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAYR28_RS11130 (AAYR28_11130) - 2185329..2186429 (-) 1101 WP_024422933.1 Rap family tetratricopeptide repeat protein -
  AAYR28_RS11135 (AAYR28_11135) - 2186417..2186614 (-) 198 WP_024422934.1 hypothetical protein -
  AAYR28_RS11140 (AAYR28_11140) spo0A 2186886..2187689 (-) 804 WP_024422935.1 sporulation transcription factor Spo0A Regulator
  AAYR28_RS11145 (AAYR28_11145) spoIVB 2187975..2189252 (-) 1278 WP_120208199.1 SpoIVB peptidase -
  AAYR28_RS11150 (AAYR28_11150) recN 2189453..2191186 (-) 1734 WP_034280267.1 DNA repair protein RecN Machinery gene
  AAYR28_RS11155 (AAYR28_11155) argR 2191220..2191669 (-) 450 WP_024422938.1 transcriptional regulator ArgR -
  AAYR28_RS11160 (AAYR28_11160) - 2191833..2192687 (-) 855 WP_034280266.1 TlyA family RNA methyltransferase -
  AAYR28_RS11165 (AAYR28_11165) dxs 2192684..2194585 (-) 1902 WP_061109340.1 1-deoxy-D-xylulose-5-phosphate synthase -
  AAYR28_RS11170 (AAYR28_11170) - 2194736..2195626 (-) 891 WP_061109341.1 polyprenyl synthetase family protein -
  AAYR28_RS11175 (AAYR28_11175) - 2195616..2195876 (-) 261 WP_003215880.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 64725.54 Da        Isoelectric Point: 4.7748

>NTDB_id=995190 AAYR28_RS11150 WP_034280267.1 2189453..2191186(-) (recN) [Bacillus safensis strain FUA2117]
MLAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRGSSEFVRYGEKKAELEGLFLVPADHPVFALC
EEQGIDASDEMMILRRDINNSGKSICRINGKLVTISLLREVGRLLLDIHGQHDNQLLMEDENHLHLLDQFGAEEIAPALL
QYQEAYDQYMKTAQKLRQLSENEQEMVHRLDLLQFQLEEIEAAQLEPGEDERLQEERHQISNYEKIYSSLQNAYNALRNE
QGGLDWVGMSSSELEQVSEINDDLKKLSEQVSNSYYLLEDSTFQMRSMLDQLEFDPARLDFIESRLNEMKQLKRKYGTTV
EEILEYAAKIEEEIDQIQNRDSHLQTLKNKLDAMSRDALLEALNVSELRKKWAKKLAKQIQTELKDLYMEKSSFDTAFSV
RYAPFGSTDCPLLDGKPVQLGKNGIDQAQFVISTNTGEPMKSLSKVASGGEISRVMLAVKSIFSAKQDVTSIIFDEVDTG
VSGRVAQAIAEKIYKVASGSQVLCITHLPQVAAMADTHLFISKRSKAGRTLTSVKPLSHEEKVSEIGRMIAGVEVTELTK
QHAKELLHQANDVKTTG

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=995190 AAYR28_RS11150 WP_034280267.1 2189453..2191186(-) (recN) [Bacillus safensis strain FUA2117]
GTGTTAGCAGAACTAACCATTAAAAACTTTGCAATCATTGAAGAGTTAACGGTTTCATTTGAAAAAGGACTAACGGTTCT
AACGGGGGAAACAGGTGCCGGAAAATCCATCATGATTGACGCTGTCTCACTTCTCGTGGGAGGAAGAGGTTCCTCTGAAT
TTGTCCGCTACGGTGAAAAAAAGGCAGAGCTGGAAGGGCTTTTTCTTGTACCAGCCGATCATCCTGTATTTGCTCTATGC
GAAGAGCAGGGAATTGACGCATCAGATGAAATGATGATTCTCCGCCGTGATATTAACAACAGCGGGAAAAGCATTTGCCG
GATTAATGGAAAGCTTGTCACCATCTCACTTTTACGGGAAGTAGGACGGCTTTTGCTTGATATACATGGACAGCACGATA
ACCAGCTGCTCATGGAAGATGAAAATCATCTGCATTTGCTCGATCAATTTGGAGCAGAAGAAATTGCACCGGCTCTCTTG
CAGTATCAAGAAGCATATGATCAATATATGAAGACGGCTCAAAAGCTCAGGCAGCTGTCTGAGAATGAGCAGGAAATGGT
GCACCGCTTAGATTTACTGCAATTTCAGCTAGAGGAGATTGAGGCGGCACAATTAGAGCCGGGGGAAGATGAGAGGCTTC
AGGAAGAGCGACATCAAATCAGCAACTACGAAAAAATCTATTCCTCACTCCAAAACGCGTACAACGCTTTGCGTAATGAG
CAAGGAGGACTAGATTGGGTTGGTATGTCCTCAAGCGAGCTTGAGCAAGTGTCTGAAATCAACGATGATTTGAAAAAGTT
ATCTGAACAAGTGTCGAACTCCTACTACTTATTAGAGGATTCAACTTTCCAAATGCGAAGCATGCTGGACCAATTAGAAT
TTGATCCGGCTCGTCTTGATTTTATTGAGTCCAGGCTGAATGAAATGAAGCAGTTAAAACGAAAATACGGCACAACCGTT
GAGGAAATTTTGGAGTATGCGGCGAAGATTGAAGAAGAAATAGATCAAATCCAAAATCGAGACAGCCATCTGCAGACGCT
CAAAAATAAATTAGATGCGATGAGCCGTGATGCTCTGCTGGAAGCACTTAACGTTTCGGAGCTGCGTAAAAAATGGGCCA
AAAAGCTAGCAAAGCAAATTCAAACAGAGCTCAAGGATTTGTATATGGAGAAGTCATCATTTGACACAGCTTTTTCTGTT
CGATATGCGCCATTTGGCAGCACTGATTGTCCGCTATTAGACGGAAAACCTGTCCAGCTCGGGAAAAATGGAATCGACCA
AGCACAATTTGTCATTTCTACAAATACAGGCGAACCGATGAAATCTTTATCGAAAGTAGCCTCAGGTGGAGAAATTTCAC
GTGTCATGCTCGCTGTGAAGAGTATTTTCTCAGCTAAACAAGACGTCACATCCATTATTTTCGATGAAGTTGATACAGGT
GTCAGCGGCAGAGTGGCACAAGCCATTGCTGAGAAAATTTACAAAGTTGCGTCTGGATCACAAGTGCTCTGTATTACACA
CCTGCCTCAAGTAGCCGCAATGGCTGACACGCATCTCTTCATTTCTAAACGCTCGAAAGCGGGCAGAACACTGACGAGTG
TTAAACCATTAAGTCATGAAGAAAAAGTGAGTGAAATTGGCCGGATGATTGCCGGTGTGGAAGTGACTGAGCTGACAAAA
CAGCACGCAAAAGAACTATTGCACCAAGCAAATGATGTCAAAACAACAGGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

75.91

100

0.759

Multiple sequence alignment