Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   AAYR28_RS10180 Genome accession   NZ_CP154909
Coordinates   2013387..2014022 (+) Length   211 a.a.
NCBI ID   WP_034280474.1    Uniprot ID   -
Organism   Bacillus safensis strain FUA2117     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2008387..2019022
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAYR28_RS10140 (AAYR28_10140) - 2008534..2009652 (+) 1119 WP_024428115.1 NADH-dependent flavin oxidoreductase -
  AAYR28_RS10145 (AAYR28_10145) - 2009710..2010216 (-) 507 WP_120208331.1 PTS glucose transporter subunit IIA -
  AAYR28_RS10150 (AAYR28_10150) - 2010386..2010805 (+) 420 WP_120208132.1 Hsp20/alpha crystallin family protein -
  AAYR28_RS10155 (AAYR28_10155) - 2010826..2011287 (-) 462 WP_034280480.1 YppG family protein -
  AAYR28_RS10160 (AAYR28_10160) - 2011395..2011775 (-) 381 WP_224426683.1 YppE family protein -
  AAYR28_RS10165 (AAYR28_10165) - 2011825..2012058 (-) 234 WP_224426684.1 DUF5446 family protein -
  AAYR28_RS10170 (AAYR28_10170) sspM 2012256..2012360 (+) 105 WP_024422772.1 acid-soluble spore protein SspM -
  AAYR28_RS10175 (AAYR28_10175) - 2012384..2013340 (-) 957 WP_061109278.1 DUF2515 domain-containing protein -
  AAYR28_RS10180 (AAYR28_10180) recU 2013387..2014022 (+) 636 WP_034280474.1 Holliday junction resolvase RecU Machinery gene
  AAYR28_RS10185 (AAYR28_10185) - 2014042..2016747 (+) 2706 WP_120208133.1 PBP1A family penicillin-binding protein -
  AAYR28_RS10190 (AAYR28_10190) - 2016784..2017293 (-) 510 WP_065214700.1 YpoC family protein -
  AAYR28_RS10195 (AAYR28_10195) nth 2017290..2017952 (-) 663 WP_024422776.1 endonuclease III -
  AAYR28_RS10200 (AAYR28_10200) - 2017970..2018674 (-) 705 WP_120208135.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 24315.71 Da        Isoelectric Point: 9.8310

>NTDB_id=995188 AAYR28_RS10180 WP_034280474.1 2013387..2014022(+) (recU) [Bacillus safensis strain FUA2117]
MIRYPNGKSYQPIQQIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLPASDLFFFWERQK
KNGRKSISKDELMEAGHIMTLGYSPRIDYIKVVETLHFSDESKQQLRSKKV

Nucleotide


Download         Length: 636 bp        

>NTDB_id=995188 AAYR28_RS10180 WP_034280474.1 2013387..2014022(+) (recU) [Bacillus safensis strain FUA2117]
ATGATTCGGTATCCAAACGGAAAATCGTATCAGCCCATACAACAAATTGGGACAAAAAAAAGAATCAGCGGCGAATCCTC
TTATAGTAACCGCGGGATGACGCTTGAGGCTGATTTAAATGAAACAAACCAATACTATTTGGTCAACGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCAGTTCAAATTGTGAATGTGGATTATCCAAAAAGAAGTGCTGCTGTCATTAAAGAAGCCTAT
TTTAAACAATCATCCACAACAGACTATAACGGGGTTTACAAAGGCCGCTATATCGATTTTGAAGCAAAGGAAACCAAAAG
CACTACCTCGTTTCCGCTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTCGTTATTATATCCGCTTTTGGCTCCGTTTATTATTTGCCCGCTTCAGATCTCTTTTTCTTCTGGGAGCGGCAGAAA
AAAAATGGCCGTAAATCCATTAGCAAAGACGAATTAATGGAAGCTGGCCACATAATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGAAAGCAAGCAGCAATTACGTTCGAAAAAGGTTTAA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

73.267

95.735

0.701

Multiple sequence alignment