Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AAYR28_RS08750 Genome accession   NZ_CP154909
Coordinates   1729575..1729955 (+) Length   126 a.a.
NCBI ID   WP_345808985.1    Uniprot ID   -
Organism   Bacillus safensis strain FUA2117     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1724575..1734955
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAYR28_RS08740 (AAYR28_08740) - 1725071..1728214 (+) 3144 WP_345808974.1 bifunctional cytochrome P450/NADPH--P450 reductase -
  AAYR28_RS08745 (AAYR28_08745) - 1728408..1729316 (+) 909 WP_024425124.1 trypsin-like serine protease -
  AAYR28_RS08750 (AAYR28_08750) nucA/comI 1729575..1729955 (+) 381 WP_345808985.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  AAYR28_RS08755 (AAYR28_08755) - 1730101..1730949 (+) 849 WP_342496180.1 STAS domain-containing protein -
  AAYR28_RS08760 (AAYR28_08760) - 1730982..1731524 (-) 543 WP_024425127.1 IseA DL-endopeptidase inhibitor family protein -
  AAYR28_RS08765 (AAYR28_08765) - 1731820..1732263 (+) 444 WP_034283419.1 hypothetical protein -
  AAYR28_RS08770 (AAYR28_08770) lexA 1732309..1732929 (-) 621 WP_034283422.1 transcriptional repressor LexA -
  AAYR28_RS08775 (AAYR28_08775) yneA 1733088..1733399 (+) 312 WP_024425130.1 cell division suppressor protein YneA -
  AAYR28_RS08780 (AAYR28_08780) - 1733417..1734064 (+) 648 WP_034283427.1 recombinase family protein -
  AAYR28_RS08785 (AAYR28_08785) - 1734134..1734364 (+) 231 WP_024425132.1 DUF896 domain-containing protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13830.54 Da        Isoelectric Point: 9.0907

>NTDB_id=995187 AAYR28_RS08750 WP_345808985.1 1729575..1729955(+) (nucA/comI) [Bacillus safensis strain FUA2117]
MGTLFGGFGEKQAAKGADRYDHVVQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGARVQYVSPSDNRGAGSWVGHQISGFPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=995187 AAYR28_RS08750 WP_345808985.1 1729575..1729955(+) (nucA/comI) [Bacillus safensis strain FUA2117]
ATGGGCACGTTGTTTGGCGGATTTGGAGAGAAGCAGGCAGCAAAAGGGGCTGATCGATATGATCATGTCGTTCAATTTCC
AAAGGAAAGGTACCCTGAAACAGGCAGTCATATTCAAGAAGCCATTCGAAAAGGGCATTCAGATGTGTGTACCATTGACC
GAAATGGAGCAGATGCCCGCAGGCAAGAATCATTAAAAGGAATTCCGACAAAACCTGGCTTTGACCGGGATGAATGGCCA
ATGGCGGTTTGTCTTGAGGGAGGAAAAGGCGCAAGAGTTCAATATGTCAGTCCATCTGATAATAGGGGGGCAGGCTCATG
GGTCGGGCATCAAATCAGCGGGTTTCCTGATGGGAAAAGAATATTATTCATTGTGAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

57.143

94.444

0.54

Multiple sequence alignment