Detailed information    

insolico Bioinformatically predicted

Overview


Name   pilZ   Type   Machinery gene
Locus tag   EJN10_RS22760 Genome accession   NZ_LR130528
Coordinates   4788852..4789208 (-) Length   118 a.a.
NCBI ID   WP_003091119.1    Uniprot ID   A0A0H2ZD30
Organism   Pseudomonas aeruginosa isolate paerg000     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 4783852..4794208
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJN10_RS22735 (BANRA_04438) - 4784235..4784867 (-) 633 WP_023114516.1 DUF4823 domain-containing protein -
  EJN10_RS22740 (BANRA_04439) - 4784932..4785828 (-) 897 WP_003091113.1 radical SAM protein -
  EJN10_RS22745 (BANRA_04440) - 4785978..4786616 (-) 639 WP_003091114.1 TetR/AcrR family transcriptional regulator -
  EJN10_RS22750 (BANRA_04441) - 4786702..4787835 (+) 1134 WP_023114517.1 aminotransferase class V-fold PLP-dependent enzyme -
  EJN10_RS22755 (BANRA_04442) - 4788061..4788837 (-) 777 WP_003091117.1 TatD family hydrolase -
  EJN10_RS22760 (BANRA_04443) pilZ 4788852..4789208 (-) 357 WP_003091119.1 PilZ domain-containing protein Machinery gene
  EJN10_RS22765 (BANRA_04444) - 4789242..4790228 (-) 987 WP_003104126.1 DNA polymerase III subunit delta' -
  EJN10_RS22770 (BANRA_04445) tmk 4790221..4790853 (-) 633 WP_124034207.1 dTMP kinase -
  EJN10_RS22775 (BANRA_04446) mltG 4790882..4791931 (-) 1050 WP_004350892.1 endolytic transglycosylase MltG -
  EJN10_RS22780 (BANRA_04447) pabC 4791937..4792752 (-) 816 WP_003110198.1 aminodeoxychorismate lyase -
  EJN10_RS22785 (BANRA_04448) fabF 4792752..4793996 (-) 1245 WP_003104132.1 beta-ketoacyl-ACP synthase II -

Sequence


Protein


Download         Length: 118 a.a.        Molecular weight: 12903.98 Da        Isoelectric Point: 9.9969

>NTDB_id=995186 EJN10_RS22760 WP_003091119.1 4788852..4789208(-) (pilZ) [Pseudomonas aeruginosa isolate paerg000]
MSLPPNLGPRNGILSLTIKDKSVLYAAYMPFIRNGGLFIPTNKNYKLGDEVFMLLNLMEEPEKIPVAGKVVWITPKGAQG
NRAAGIGVQFNDGDNTARNKIETYLAGALKSDRPTHTM

Nucleotide


Download         Length: 357 bp        

>NTDB_id=995186 EJN10_RS22760 WP_003091119.1 4788852..4789208(-) (pilZ) [Pseudomonas aeruginosa isolate paerg000]
ATGAGTTTGCCACCCAATCTGGGGCCGCGTAACGGCATCCTGTCCTTGACCATCAAGGACAAGTCCGTGCTGTACGCCGC
CTACATGCCGTTCATCAGGAATGGCGGGCTGTTCATTCCCACCAACAAGAACTACAAGCTCGGCGACGAAGTCTTCATGC
TGCTCAACCTGATGGAAGAGCCGGAGAAGATCCCGGTGGCCGGCAAGGTCGTCTGGATCACCCCGAAGGGCGCCCAGGGC
AACCGTGCGGCTGGCATCGGCGTGCAGTTCAACGACGGTGACAACACCGCCCGCAACAAGATCGAAACCTACCTGGCCGG
GGCGCTGAAGTCGGACCGGCCGACCCACACGATGTAA

Domains


Predicted by InterProScan.

(17-106)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure
  AlphaFold DB A0A0H2ZD30

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilZ Legionella pneumophila str. Paris

49.074

91.525

0.449

  pilZ Legionella pneumophila strain ERS1305867

49.074

91.525

0.449


Multiple sequence alignment