Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   AAYR28_RS06625 Genome accession   NZ_CP154909
Coordinates   1304803..1305264 (-) Length   153 a.a.
NCBI ID   WP_008356877.1    Uniprot ID   -
Organism   Bacillus safensis strain FUA2117     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1299803..1310264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAYR28_RS06600 (AAYR28_06600) - 1300407..1301291 (+) 885 WP_024424706.1 cation diffusion facilitator family transporter -
  AAYR28_RS06605 (AAYR28_06605) - 1301356..1301508 (-) 153 WP_162842519.1 hypothetical protein -
  AAYR28_RS06610 (AAYR28_06610) - 1301810..1302349 (+) 540 WP_024424707.1 RDD family protein -
  AAYR28_RS06615 (AAYR28_06615) - 1302473..1303783 (+) 1311 WP_034281575.1 MFS transporter -
  AAYR28_RS06620 (AAYR28_06620) - 1303857..1304765 (+) 909 WP_024424709.1 chemotaxis protein -
  AAYR28_RS06625 (AAYR28_06625) kre 1304803..1305264 (-) 462 WP_008356877.1 YkyB family protein Regulator
  AAYR28_RS06630 (AAYR28_06630) - 1305401..1305589 (-) 189 Protein_1251 hypothetical protein -
  AAYR28_RS06635 (AAYR28_06635) - 1305765..1305941 (+) 177 WP_169737552.1 hypothetical protein -
  AAYR28_RS06640 (AAYR28_06640) - 1306068..1306985 (-) 918 WP_268468668.1 AraC family transcriptional regulator -
  AAYR28_RS06645 (AAYR28_06645) - 1307099..1307995 (+) 897 WP_217008572.1 EamA family transporter -
  AAYR28_RS06650 (AAYR28_06650) - 1308148..1308363 (-) 216 WP_024424712.1 hypothetical protein -
  AAYR28_RS06655 (AAYR28_06655) - 1308623..1309900 (-) 1278 WP_034281582.1 MFS transporter -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17711.30 Da        Isoelectric Point: 10.2452

>NTDB_id=995180 AAYR28_RS06625 WP_008356877.1 1304803..1305264(-) (kre) [Bacillus safensis strain FUA2117]
MDDYAHTKDIEPTAENIAKAIYTVNRHAKTAPNPKFLYLLKKRALQKLLQEGKGRKVGLHFSNNPKYSQQQSDVLIEIGD
YYFHLPPTKEDFEFLPHLGNLNQSYRNPKANMSLNRAKQILQTYVGLKEKPAATKQKSHYTKPVFKRLGESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=995180 AAYR28_RS06625 WP_008356877.1 1304803..1305264(-) (kre) [Bacillus safensis strain FUA2117]
ATGGACGATTATGCTCATACTAAAGACATAGAACCTACAGCAGAAAACATCGCAAAAGCCATTTATACTGTTAACCGCCA
TGCTAAAACCGCACCAAACCCCAAGTTTCTTTATCTTTTGAAAAAACGCGCGCTGCAAAAACTATTGCAAGAAGGTAAAG
GAAGAAAAGTGGGCCTACATTTCTCTAACAATCCCAAGTATAGTCAACAACAGTCCGACGTGCTGATTGAAATTGGAGAT
TATTATTTTCACCTGCCACCAACGAAAGAAGACTTCGAATTTTTGCCACACTTAGGAAATTTAAATCAATCATATCGCAA
TCCGAAAGCGAATATGTCATTAAACCGAGCAAAACAAATACTTCAAACGTATGTCGGTTTAAAAGAAAAACCTGCCGCCA
CAAAACAAAAATCACATTACACAAAGCCCGTCTTCAAACGTCTCGGGGAAAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

75.974

100

0.765

Multiple sequence alignment