Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AAYR28_RS01865 Genome accession   NZ_CP154909
Coordinates   347731..348159 (-) Length   142 a.a.
NCBI ID   WP_024424305.1    Uniprot ID   A0A5C0WGQ8
Organism   Bacillus safensis strain FUA2117     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 342731..353159
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAYR28_RS01835 (AAYR28_01835) - 342893..343222 (+) 330 WP_024424311.1 YckD family protein -
  AAYR28_RS01840 (AAYR28_01840) - 343266..344030 (-) 765 WP_120208431.1 MBL fold metallo-hydrolase -
  AAYR28_RS01845 (AAYR28_01845) - 344146..344562 (+) 417 WP_176967337.1 Lrp/AsnC family transcriptional regulator -
  AAYR28_RS01850 (AAYR28_01850) - 344591..345397 (+) 807 WP_327827465.1 AAC(3) family N-acetyltransferase -
  AAYR28_RS01855 (AAYR28_01855) - 345399..345785 (-) 387 WP_120208425.1 competence protein ComJ -
  AAYR28_RS01860 (AAYR28_01860) - 345906..347603 (-) 1698 WP_046313811.1 methyl-accepting chemotaxis protein -
  AAYR28_RS01865 (AAYR28_01865) nucA/comI 347731..348159 (-) 429 WP_024424305.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  AAYR28_RS01870 (AAYR28_01870) - 348527..350596 (+) 2070 WP_034283307.1 hydantoinase/oxoprolinase family protein -
  AAYR28_RS01875 (AAYR28_01875) - 350586..352574 (+) 1989 WP_120208421.1 hydantoinase B/oxoprolinase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15971.96 Da        Isoelectric Point: 6.2215

>NTDB_id=995162 AAYR28_RS01865 WP_024424305.1 347731..348159(-) (nucA/comI) [Bacillus safensis strain FUA2117]
MKLLKMILLLLLIVIGVATGYIQLEQGKQETANSSYDKTIHFPSDRYPETAKHIEEAIDEGHSSICTIDRKHSDEQRDRS
LHGVPTKRGYDRDEWPMAMCKEGGTGASVKYVRPSDNRGAGSWVSHQLSDDPDGTRIQFIID

Nucleotide


Download         Length: 429 bp        

>NTDB_id=995162 AAYR28_RS01865 WP_024424305.1 347731..348159(-) (nucA/comI) [Bacillus safensis strain FUA2117]
ATGAAACTTCTTAAAATGATTCTCTTGCTTTTATTGATTGTTATTGGTGTAGCAACAGGCTATATCCAGCTGGAGCAAGG
GAAACAAGAGACAGCGAATTCATCTTATGACAAAACGATTCATTTTCCATCAGACCGCTATCCCGAAACAGCCAAGCACA
TAGAAGAAGCCATTGATGAAGGTCATTCGTCCATTTGTACAATTGACCGTAAACATAGTGATGAGCAGAGGGATCGATCA
TTACATGGCGTTCCAACAAAGCGCGGGTATGATCGTGACGAATGGCCAATGGCGATGTGCAAAGAAGGAGGCACAGGAGC
TTCTGTCAAATATGTACGCCCTTCTGATAATAGAGGCGCAGGCTCGTGGGTAAGTCATCAATTATCGGATGATCCAGACG
GCACAAGAATCCAATTTATCATCGATTAG

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-136)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5C0WGQ8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

66.667

80.282

0.535

Multiple sequence alignment