Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   AAYR28_RS00220 Genome accession   NZ_CP154909
Coordinates   37879..38169 (-) Length   96 a.a.
NCBI ID   WP_087975202.1    Uniprot ID   -
Organism   Bacillus safensis strain FUA2117     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 32879..43169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAYR28_RS00180 (AAYR28_00180) - 32911..33240 (+) 330 WP_024425625.1 cyclic-di-AMP receptor -
  AAYR28_RS00185 (AAYR28_00185) - 33253..33693 (+) 441 WP_024425626.1 YaaR family protein -
  AAYR28_RS00190 (AAYR28_00190) holB 33705..34694 (+) 990 WP_120206887.1 DNA polymerase III subunit delta' -
  AAYR28_RS00195 (AAYR28_00195) - 34697..35524 (+) 828 WP_024425628.1 stage 0 sporulation family protein -
  AAYR28_RS00200 (AAYR28_00200) yabA 35539..35892 (+) 354 WP_024425629.1 DNA replication initiation control protein YabA -
  AAYR28_RS00205 (AAYR28_00205) - 35948..36691 (+) 744 WP_120206885.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  AAYR28_RS00210 (AAYR28_00210) - 36678..36977 (+) 300 WP_034284140.1 GIY-YIG nuclease family protein -
  AAYR28_RS00215 (AAYR28_00215) rsmI 36952..37833 (+) 882 WP_120206884.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  AAYR28_RS00220 (AAYR28_00220) abrB 37879..38169 (-) 291 WP_087975202.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  AAYR28_RS00225 (AAYR28_00225) metG 38690..40690 (+) 2001 WP_048239539.1 methionine--tRNA ligase -
  AAYR28_RS00230 (AAYR28_00230) - 40772..41539 (+) 768 WP_024425634.1 TatD family hydrolase -
  AAYR28_RS00235 (AAYR28_00235) - 41784..42986 (+) 1203 WP_044334281.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10853.65 Da        Isoelectric Point: 7.9655

>NTDB_id=995159 AAYR28_RS00220 WP_087975202.1 37879..38169(-) (abrB) [Bacillus safensis strain FUA2117]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=995159 AAYR28_RS00220 WP_087975202.1 37879..38169(-) (abrB) [Bacillus safensis strain FUA2117]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGACGCGTGGTGATTCCAATCGAACTTCGCCGTAC
GTTAGGAATCGCTGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCCTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACAGGTGAAGTATCAGACGATAACCTTAAGCTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938

Multiple sequence alignment