Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AAVD42_RS19585 Genome accession   NZ_CP154908
Coordinates   3633234..3634136 (+) Length   300 a.a.
NCBI ID   WP_065097271.1    Uniprot ID   -
Organism   Bacillus pumilus strain FUA2116     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3628234..3639136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVD42_RS19565 (AAVD42_19565) - 3628900..3630636 (+) 1737 WP_345807442.1 glycosyltransferase -
  AAVD42_RS19570 (AAVD42_19570) - 3630633..3630908 (+) 276 WP_003211418.1 FlhB-like flagellar biosynthesis protein -
  AAVD42_RS19575 (AAVD42_19575) sucC 3631085..3632245 (+) 1161 WP_003211841.1 ADP-forming succinate--CoA ligase subunit beta -
  AAVD42_RS19580 (AAVD42_19580) sucD 3632268..3633170 (+) 903 WP_003212080.1 succinate--CoA ligase subunit alpha -
  AAVD42_RS19585 (AAVD42_19585) dprA 3633234..3634136 (+) 903 WP_065097271.1 DNA-processing protein DprA Machinery gene
  AAVD42_RS19590 (AAVD42_19590) topA 3634330..3636405 (+) 2076 WP_044141928.1 type I DNA topoisomerase -
  AAVD42_RS19595 (AAVD42_19595) trmFO 3636476..3637780 (+) 1305 WP_345807443.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  AAVD42_RS19600 (AAVD42_19600) xerC 3637843..3638760 (+) 918 WP_003211704.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34133.60 Da        Isoelectric Point: 9.1124

>NTDB_id=995154 AAVD42_RS19585 WP_065097271.1 3633234..3634136(+) (dprA) [Bacillus pumilus strain FUA2116]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPKLYINEETHHFKQDRSLQTIDFTRLKQAEEKEFPIFQHIVQAYLKQNIHM
IPITSPLYPSTLKHIYDPPPVLFLKGNVSYLNEEKSLGVVGTRVPSSYGEACVKKIVGELVKEDWMIVSGLAKGIDGLAH
KECIRNKGKTIGIIAGGFQHLYPKEHVQMAEYMGEHHLLLSEHPPYVKPEKWHFPLRNRLISALTSGTIVIQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDPNSTGPARLIQQGAKLVHSTKDILEEFSFRSVQYTELL

Nucleotide


Download         Length: 903 bp        

>NTDB_id=995154 AAVD42_RS19585 WP_065097271.1 3633234..3634136(+) (dprA) [Bacillus pumilus strain FUA2116]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCTTTGTTAACAAAATGGTGGAA
AGTCGATCCTAAGCTATATATAAATGAAGAAACACATCATTTCAAACAGGATCGATCATTACAAACAATCGACTTTACCC
GCTTAAAACAAGCCGAAGAAAAGGAATTCCCCATTTTCCAACACATCGTTCAAGCCTATTTAAAGCAAAACATTCACATG
ATTCCCATCACATCACCCTTATATCCCAGCACACTAAAACATATTTATGATCCTCCCCCTGTGTTATTCCTAAAAGGAAA
CGTGTCATATTTAAATGAAGAAAAAAGTTTAGGTGTAGTAGGCACGCGTGTTCCATCGTCTTATGGAGAAGCATGTGTGA
AGAAAATTGTTGGTGAACTTGTTAAGGAAGATTGGATGATTGTCAGTGGCTTAGCAAAAGGCATTGATGGACTTGCACAT
AAAGAGTGCATTAGGAATAAAGGGAAAACGATCGGTATTATAGCAGGCGGATTTCAGCATTTATACCCAAAGGAACATGT
GCAAATGGCTGAATACATGGGCGAGCATCATTTGCTTTTATCCGAGCATCCGCCTTATGTCAAACCAGAAAAGTGGCATT
TCCCTTTGAGGAATCGTTTAATTAGTGCGCTGACAAGTGGGACCATCGTGATTCAGTGCAAAGAAAAGAGCGGTTCACTC
ATTACCGCGTATCAAGCACTTGAGCAAGGCAAAGAGGTATTTGCGGTTGCAGGATCAATCTTTGATCCTAATTCCACAGG
TCCAGCCAGACTTATACAGCAGGGAGCAAAGCTTGTTCATTCAACGAAGGATATTTTAGAGGAATTCTCCTTCCGCAGCG
TTCAATATACTGAACTCTTATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

54.704

95.667

0.523
  dprA Lactococcus lactis subsp. cremoris KW2

38.542

96

0.37

Multiple sequence alignment