Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   AAVD42_RS18740 Genome accession   NZ_CP154908
Coordinates   3467384..3467662 (+) Length   92 a.a.
NCBI ID   WP_034325036.1    Uniprot ID   A0A081L6T2
Organism   Bacillus pumilus strain FUA2116     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3462384..3472662
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVD42_RS18715 (AAVD42_18715) - 3462476..3462751 (-) 276 WP_034619939.1 hypothetical protein -
  AAVD42_RS18720 (AAVD42_18720) - 3462895..3464514 (+) 1620 WP_044142036.1 ATP-binding cassette domain-containing protein -
  AAVD42_RS18725 (AAVD42_18725) - 3464555..3465787 (-) 1233 WP_345807383.1 aminopeptidase -
  AAVD42_RS18730 (AAVD42_18730) - 3465894..3466025 (-) 132 WP_003210922.1 protein YkpC -
  AAVD42_RS18735 (AAVD42_18735) mreBH 3466100..3467107 (-) 1008 WP_012009812.1 rod-share determining protein MreBH -
  AAVD42_RS18740 (AAVD42_18740) abrB 3467384..3467662 (+) 279 WP_034325036.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  AAVD42_RS18745 (AAVD42_18745) - 3467807..3469117 (+) 1311 WP_345807384.1 ATP-binding protein -
  AAVD42_RS18750 (AAVD42_18750) - 3469122..3469958 (+) 837 WP_345807385.1 gamma-glutamylcyclotransferase -
  AAVD42_RS18755 (AAVD42_18755) - 3469996..3470664 (+) 669 WP_044142031.1 TrkA family potassium uptake protein -
  AAVD42_RS18760 (AAVD42_18760) ade 3470926..3472654 (+) 1729 Protein_3474 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10318.03 Da        Isoelectric Point: 4.8604

>NTDB_id=995153 AAVD42_RS18740 WP_034325036.1 3467384..3467662(+) (abrB) [Bacillus pumilus strain FUA2116]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSMEFFIDGDKIVLKKYQPQGVCLMTGEITSENHEYGNGKINLSAEGAE
LLLKELQEALQQ

Nucleotide


Download         Length: 279 bp        

>NTDB_id=995153 AAVD42_RS18740 WP_034325036.1 3467384..3467662(+) (abrB) [Bacillus pumilus strain FUA2116]
TTGAAATCTATCGGAGTCGTAAGAAAAGTAGATGAACTAGGGCGTATTGTGATGCCAATCGAATTGAGAAGAGCACTTGA
TATCGCAATTAAAGACAGTATGGAATTTTTTATAGATGGAGATAAAATCGTCTTGAAAAAATATCAGCCTCAAGGTGTTT
GTCTCATGACTGGTGAGATTACTTCTGAGAATCATGAATATGGAAATGGTAAAATTAATTTAAGCGCTGAAGGCGCAGAA
CTACTGCTAAAAGAGCTGCAAGAAGCCCTTCAACAGTAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-49)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A081L6T2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

56.044

98.913

0.554

Multiple sequence alignment