Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   AAVD42_RS18625 Genome accession   NZ_CP154908
Coordinates   3446146..3446727 (+) Length   193 a.a.
NCBI ID   WP_268484881.1    Uniprot ID   -
Organism   Bacillus pumilus strain FUA2116     
Function   repression of comK (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 3446849..3447796 3446146..3446727 flank 122


Gene organization within MGE regions


Location: 3446146..3447796
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVD42_RS18625 (AAVD42_18625) rok 3446146..3446727 (+) 582 WP_268484881.1 transcriptional regulator Rok Regulator

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21775.74 Da        Isoelectric Point: 9.7309

>NTDB_id=995152 AAVD42_RS18625 WP_268484881.1 3446146..3446727(+) (rok) [Bacillus pumilus strain FUA2116]
MFNEREALRLRLEQLNEAEVKVIREYQIERDAIYAKLRELDRQGTGLVSDTKKEVRTERKTDSLPVLAELAAQEMRSYQP
PAQSQSNSASTLGTGQLTGAPVGIPEGSTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNM
TTFMQSLIKMYPEVKKPYRGQYILEGDIQTEDE

Nucleotide


Download         Length: 582 bp        

>NTDB_id=995152 AAVD42_RS18625 WP_268484881.1 3446146..3446727(+) (rok) [Bacillus pumilus strain FUA2116]
TTGTTTAATGAGAGGGAAGCGTTACGATTACGATTGGAGCAATTAAACGAAGCAGAAGTAAAGGTCATTCGTGAATATCA
AATTGAGCGAGATGCGATTTATGCAAAATTAAGAGAATTAGACCGTCAAGGAACAGGTCTAGTGTCAGATACAAAAAAAG
AAGTGCGTACAGAAAGAAAAACGGATTCACTGCCTGTATTAGCTGAACTGGCTGCACAAGAAATGAGAAGCTACCAGCCG
CCTGCACAATCACAATCAAATTCTGCATCAACTTTAGGAACAGGACAGCTAACCGGTGCACCTGTAGGTATTCCTGAAGG
ATCTACAAGACGCAGAAGAGGCACAGCCCGACCTGGTTCAAAGGCAGCTAAGCTTCGTGAAGCTGCGATTAAAACGTTAA
AGCGTCATAATGCAGCGATTAAAAGCTCTGAACTTCAAAAAGAAATTGAAAAAGAGAGCGGTCTTGAAATTCCAAATATG
ACAACGTTTATGCAAAGCTTAATTAAAATGTATCCTGAAGTGAAAAAGCCATATCGCGGACAGTATATTTTAGAAGGCGA
TATTCAAACAGAAGACGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

78.421

98.446

0.772

Multiple sequence alignment