Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   AAVD42_RS18495 Genome accession   NZ_CP154908
Coordinates   3426014..3426475 (-) Length   153 a.a.
NCBI ID   WP_044139814.1    Uniprot ID   A0AB34QXM2
Organism   Bacillus pumilus strain FUA2116     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 3421014..3431475
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVD42_RS18470 (AAVD42_18470) - 3421620..3422504 (+) 885 WP_345807365.1 cation diffusion facilitator family transporter -
  AAVD42_RS18475 (AAVD42_18475) - 3422568..3422720 (-) 153 WP_170965990.1 hypothetical protein -
  AAVD42_RS18480 (AAVD42_18480) - 3423022..3423561 (+) 540 WP_345807366.1 RDD family protein -
  AAVD42_RS18485 (AAVD42_18485) - 3423687..3424997 (+) 1311 WP_345807367.1 MFS transporter -
  AAVD42_RS18490 (AAVD42_18490) - 3425071..3425979 (+) 909 WP_044139813.1 chemotaxis protein -
  AAVD42_RS18495 (AAVD42_18495) kre 3426014..3426475 (-) 462 WP_044139814.1 YkyB family protein Regulator
  AAVD42_RS18500 (AAVD42_18500) - 3426707..3427600 (-) 894 WP_345807368.1 AraC family transcriptional regulator -
  AAVD42_RS18505 (AAVD42_18505) - 3427708..3428604 (+) 897 WP_345807369.1 DMT family transporter -
  AAVD42_RS18510 (AAVD42_18510) - 3428800..3429015 (-) 216 WP_003211341.1 hypothetical protein -
  AAVD42_RS18515 (AAVD42_18515) - 3429204..3429365 (-) 162 WP_345807370.1 hypothetical protein -
  AAVD42_RS18520 (AAVD42_18520) - 3429366..3430643 (-) 1278 WP_044142063.1 MFS transporter -
  AAVD42_RS18525 (AAVD42_18525) - 3430717..3431214 (-) 498 WP_044142062.1 L,D-transpeptidase family protein -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17683.29 Da        Isoelectric Point: 10.2294

>NTDB_id=995151 AAVD42_RS18495 WP_044139814.1 3426014..3426475(-) (kre) [Bacillus pumilus strain FUA2116]
MDDYAHTKDIEPTAENIAKAIYTVNRHAKTAPNPKFLYLLKKRALQKLLQEGKGKKVGLHFSNNPKYSQQQSDVLIEIGD
YYFHLPPTKEDFEFLPHLGNLNQSYRNPKANMSLNRAKQILQTYVGLKEKPAATKQKSHYTKPVFKRLGESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=995151 AAVD42_RS18495 WP_044139814.1 3426014..3426475(-) (kre) [Bacillus pumilus strain FUA2116]
ATGGACGATTATGCTCATACTAAAGACATAGAACCTACAGCAGAAAACATCGCAAAAGCCATTTATACTGTTAACCGTCA
TGCTAAAACCGCACCAAATCCCAAGTTTCTTTATCTTTTGAAAAAACGTGCGCTGCAAAAACTATTGCAAGAAGGTAAAG
GAAAAAAAGTAGGCCTACATTTCTCTAACAATCCCAAATATAGTCAACAACAGTCCGACGTGCTGATTGAAATTGGAGAT
TATTATTTTCACCTGCCACCAACCAAAGAAGACTTCGAATTTTTGCCACACTTAGGAAATTTAAATCAATCATATCGCAA
TCCGAAAGCGAATATGTCATTAAACCGAGCAAAGCAAATCCTTCAAACGTATGTCGGTTTAAAAGAAAAACCTGCCGCCA
CAAAACAAAAATCACATTATACGAAACCCGTCTTCAAACGACTCGGGGAAAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

76.623

100

0.771

Multiple sequence alignment