Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpC   Type   Regulator
Locus tag   AAVD42_RS18320 Genome accession   NZ_CP154908
Coordinates   3388745..3390853 (-) Length   702 a.a.
NCBI ID   WP_345807355.1    Uniprot ID   -
Organism   Bacillus pumilus strain FUA2116     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 3383745..3395853
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVD42_RS18295 (AAVD42_18295) - 3384330..3384572 (+) 243 WP_065097155.1 aspartyl-phosphate phosphatase Spo0E family protein -
  AAVD42_RS18300 (AAVD42_18300) - 3384620..3386125 (-) 1506 WP_345807354.1 ATP-binding protein -
  AAVD42_RS18305 (AAVD42_18305) - 3386331..3386786 (+) 456 WP_003211701.1 MarR family transcriptional regulator -
  AAVD42_RS18310 (AAVD42_18310) motB 3386816..3387583 (-) 768 WP_044139785.1 flagellar motor protein MotB -
  AAVD42_RS18315 (AAVD42_18315) motA 3387576..3388370 (-) 795 WP_003212085.1 flagellar motor stator protein MotA -
  AAVD42_RS18320 (AAVD42_18320) clpC 3388745..3390853 (-) 2109 WP_345807355.1 ATP-dependent Clp protease ATP-binding subunit Regulator
  AAVD42_RS18325 (AAVD42_18325) - 3391097..3392140 (+) 1044 WP_345807356.1 hypothetical protein -
  AAVD42_RS18330 (AAVD42_18330) queC 3392416..3393072 (+) 657 WP_345807357.1 7-cyano-7-deazaguanine synthase QueC -
  AAVD42_RS18335 (AAVD42_18335) queD 3393073..3393513 (+) 441 WP_003211826.1 6-carboxytetrahydropterin synthase QueD -
  AAVD42_RS18340 (AAVD42_18340) queE 3393506..3394237 (+) 732 WP_065097161.1 7-carboxy-7-deazaguanine synthase QueE -
  AAVD42_RS18345 (AAVD42_18345) queF 3394253..3394750 (+) 498 WP_003211403.1 preQ(1) synthase -
  AAVD42_RS18350 (AAVD42_18350) - 3395018..3395236 (+) 219 WP_044139792.1 hypothetical protein -
  AAVD42_RS18355 (AAVD42_18355) - 3395329..3395853 (-) 525 WP_003211151.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 702 a.a.        Molecular weight: 78182.83 Da        Isoelectric Point: 5.0378

>NTDB_id=995150 AAVD42_RS18320 WP_345807355.1 3388745..3390853(-) (clpC) [Bacillus pumilus strain FUA2116]
MRCQHCQVNEATIRLNMQVNSSRSQMVLCEDCYTSLMEQSKMKMGPQLFGGSSFFSGQEQAGHMQNVEQPKQKGLLDELG
RNLTDGANAGLIDPVIGRDEEVARVIEILNRRNKNNPVLIGEPGVGKSAIAEGLALKIASGDVPNKLKNKQIYLLDVSSL
VANTGIRGQFEERMKQLIKELQSRKNIILFVDEIHLLVGAGSAEGSMDAGNILKPALARGELQLVGATTLKEYRQIEKDA
ALERRFQPVIVDEPTQAEAIEILKGIQDKYESYHGVTYSAEAIQACVQLSSRYIQDRHLPDKAIDLMDEAGSKANLSIDA
ASEDELTNRLTEIAAEKQAALKEEQYEKAAKLRDEEEAIEARLQNKTNDKEHVVTAEDIQAIVEQKTGIPVGKLQADEQT
KMKEIDVRLKARVIGQEHAVEKVAKAVKRSRAGLKSKHRPTGSFLFVGPTGVGKTELSKTLAEELFGSRDAIIRLDMSEY
MEKHSVSKLIGSPPGYVGHDEAGQLTEKVRRKPYSIILLDEIEKAHPDVQHMFLQIMEDGRLTDSQGRTVSFKDTVIIMT
SNAGSTDKTVKVGFQSDQEEAIEEQSLIDSLSAYFKPEFLNRFDSIIQFDSLDRDDLVKIVDLLLNELSEQLKEQNLTVH
VTKEAKEKIAELGYHPAFGARPLRRTIQEHVEDQMTEILLEEEKLSGFTVDVEDNEIVVKKG

Nucleotide


Download         Length: 2109 bp        

>NTDB_id=995150 AAVD42_RS18320 WP_345807355.1 3388745..3390853(-) (clpC) [Bacillus pumilus strain FUA2116]
ATGCGTTGTCAACATTGTCAAGTAAATGAAGCAACAATTCGCCTGAATATGCAAGTGAATTCATCCCGGAGCCAAATGGT
TTTATGTGAAGACTGCTACACCTCTTTGATGGAGCAATCAAAAATGAAAATGGGACCTCAATTGTTCGGAGGAAGCTCAT
TCTTCTCTGGGCAAGAGCAAGCAGGACATATGCAAAACGTAGAGCAGCCAAAGCAAAAAGGCTTACTCGATGAACTTGGC
CGCAATTTAACAGATGGCGCAAATGCTGGTTTAATTGATCCAGTCATCGGCCGTGATGAAGAAGTCGCAAGAGTCATTGA
GATTTTAAATAGAAGAAATAAAAACAATCCTGTCCTCATTGGTGAACCAGGTGTTGGGAAATCAGCGATCGCTGAAGGAC
TTGCACTGAAAATTGCAAGTGGCGATGTACCAAATAAATTAAAGAACAAACAAATCTATTTATTAGATGTCTCCTCCCTT
GTAGCGAATACAGGGATACGTGGTCAATTTGAGGAAAGAATGAAGCAGTTAATTAAAGAACTGCAAAGCCGTAAAAATAT
TATCTTATTTGTAGATGAAATCCATCTTCTTGTAGGCGCAGGATCTGCTGAAGGGTCAATGGATGCTGGCAACATTTTAA
AACCAGCCCTTGCACGAGGCGAGCTCCAGCTAGTAGGTGCGACGACATTAAAAGAATATCGTCAAATTGAAAAAGATGCC
GCACTTGAACGACGCTTTCAGCCCGTCATTGTAGATGAGCCAACACAAGCTGAAGCGATCGAGATTTTAAAAGGCATTCA
AGATAAGTACGAAAGCTATCATGGCGTCACCTATTCAGCGGAAGCCATTCAAGCGTGTGTTCAATTATCTTCCCGGTATA
TTCAAGACCGTCATTTGCCGGATAAAGCCATTGATTTAATGGATGAAGCAGGTTCAAAAGCGAACCTCTCCATTGATGCA
GCAAGTGAAGATGAACTAACGAATCGTCTGACAGAAATCGCTGCTGAAAAACAAGCTGCTTTAAAAGAAGAACAATATGA
AAAAGCGGCGAAGCTTCGAGATGAAGAAGAAGCCATTGAAGCAAGACTTCAAAACAAAACAAATGACAAAGAACATGTCG
TCACAGCAGAAGACATTCAAGCCATTGTGGAACAAAAAACAGGCATCCCTGTCGGCAAACTGCAAGCAGACGAACAAACC
AAAATGAAAGAAATTGACGTCCGCTTAAAAGCACGAGTAATCGGCCAGGAACATGCGGTTGAAAAGGTAGCGAAAGCTGT
GAAAAGAAGCAGAGCCGGCTTAAAATCGAAACATAGACCAACTGGCTCCTTCCTTTTCGTTGGACCAACAGGTGTCGGGA
AAACCGAATTGTCGAAAACGCTAGCTGAAGAATTATTTGGTTCAAGAGATGCGATCATCCGTTTAGATATGAGTGAGTAC
ATGGAGAAACACTCAGTATCTAAGCTCATCGGTTCTCCTCCTGGTTACGTTGGACATGATGAAGCAGGCCAGCTGACAGA
AAAAGTGCGCAGAAAACCATACAGCATCATTTTGCTGGATGAAATCGAAAAAGCACATCCTGATGTGCAGCATATGTTCC
TTCAAATCATGGAAGATGGCCGGTTAACAGACAGCCAAGGCAGAACCGTCAGCTTTAAAGATACAGTCATCATCATGACA
AGTAACGCAGGCAGCACAGATAAAACGGTCAAAGTCGGCTTCCAGTCTGATCAGGAAGAAGCGATTGAAGAACAATCACT
CATTGATTCACTCAGCGCCTATTTCAAACCAGAATTTTTGAACCGTTTTGACAGCATCATTCAGTTTGACTCATTAGATC
GAGATGATTTAGTGAAGATTGTGGATCTTCTGCTCAATGAGCTGTCAGAACAATTAAAAGAGCAGAATTTAACAGTCCAT
GTGACAAAAGAAGCGAAAGAAAAAATTGCAGAACTTGGATATCATCCTGCATTTGGTGCTCGTCCACTGCGAAGAACCAT
TCAAGAGCACGTTGAAGATCAAATGACGGAAATATTGCTTGAAGAAGAAAAGCTTTCAGGATTTACTGTAGATGTTGAAG
ATAACGAAATTGTCGTAAAAAAAGGATAG

Domains

Predicted by InterproScan.

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(612-687)

ATPase family associated with various cellular activities (AAA) (AAA)

(118-250)

AAA domain (Cdc48 subfamily) (AAA_2)

(439-606)

AAA lid domain (AAA_lid_9)

(256-355)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpC Lactococcus lactis subsp. cremoris KW2

56.369

100

0.593
  clpE Streptococcus mutans UA159

57.479

100

0.591
  clpE Streptococcus pneumoniae Rx1

55.11

100

0.568
  clpE Streptococcus pneumoniae D39

55.11

100

0.568
  clpE Streptococcus pneumoniae R6

55.11

100

0.568
  clpE Streptococcus pneumoniae TIGR4

55.11

100

0.568
  clpC Bacillus subtilis subsp. subtilis str. 168

53.125

95.726

0.509
  clpC Lactococcus lactis subsp. lactis strain DGCC12653

47.327

90.598

0.429
  clpC Streptococcus thermophilus LMD-9

45.652

91.738

0.419
  clpC Streptococcus thermophilus LMG 18311

45.497

91.738

0.417
  clpC Streptococcus pneumoniae TIGR4

44.565

91.738

0.409
  clpC Streptococcus pneumoniae Rx1

44.757

91.026

0.407
  clpC Streptococcus pneumoniae D39

44.757

91.026

0.407
  clpC Streptococcus mutans UA159

44.444

89.744

0.399

Multiple sequence alignment