Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   AAVD42_RS15965 Genome accession   NZ_CP154908
Coordinates   2942743..2943534 (+) Length   263 a.a.
NCBI ID   WP_345807158.1    Uniprot ID   -
Organism   Bacillus pumilus strain FUA2116     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 2937743..2948534
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVD42_RS15930 (AAVD42_15930) - 2937826..2938374 (+) 549 WP_003217810.1 thioredoxin family protein -
  AAVD42_RS15935 (AAVD42_15935) - 2938711..2939178 (+) 468 WP_003217856.1 DUF393 domain-containing protein -
  AAVD42_RS15940 (AAVD42_15940) - 2939215..2940471 (-) 1257 WP_345807156.1 helix-turn-helix transcriptional regulator -
  AAVD42_RS15945 (AAVD42_15945) - 2940746..2941333 (+) 588 WP_185108759.1 nitroreductase -
  AAVD42_RS15950 (AAVD42_15950) - 2941372..2941527 (-) 156 WP_012009317.1 YfhD family protein -
  AAVD42_RS15955 (AAVD42_15955) - 2941589..2941699 (-) 111 WP_017358836.1 YfhE family protein -
  AAVD42_RS15960 (AAVD42_15960) - 2941752..2942648 (-) 897 WP_345807157.1 TIGR01777 family oxidoreductase -
  AAVD42_RS15965 (AAVD42_15965) recX 2942743..2943534 (+) 792 WP_345807158.1 recombination regulator RecX Regulator
  AAVD42_RS15970 (AAVD42_15970) - 2943538..2943852 (+) 315 WP_106030246.1 YfhH family protein -
  AAVD42_RS15975 (AAVD42_15975) - 2944013..2944186 (-) 174 WP_003217811.1 YpzG family protein -
  AAVD42_RS15980 (AAVD42_15980) - 2944212..2944361 (-) 150 WP_003217849.1 small, acid-soluble spore protein K -
  AAVD42_RS15985 (AAVD42_15985) - 2944478..2944750 (+) 273 WP_326287160.1 YfhJ family protein -
  AAVD42_RS15990 (AAVD42_15990) - 2945043..2946026 (+) 984 WP_003217835.1 glycosyltransferase family 2 protein -

Sequence

Protein


Download         Length: 263 a.a.        Molecular weight: 30607.02 Da        Isoelectric Point: 6.9987

>NTDB_id=995135 AAVD42_RS15965 WP_345807158.1 2942743..2943534(+) (recX) [Bacillus pumilus strain FUA2116]
MPYITKISAQKNNTERVNIFLDEKYAFSVDLDVLVQHDLKKGKELDEADIIDIQFGDAVKKGFQQAVDYLSYRMRSVKEV
TDYLTKKEIPAPAISEIIHKLKHYKYVNDLEFAEAYVSTHRKTNSKGPSVLKKELKLKGIDDDNIEQALSQYPDDLQLEE
AVKQVQKLVRKEKNRSAKEIEQRIKLQLQRKGFSFGIIDKAIQEAYDGQEEEKEEEALLYMMEKAKRKVGYDGSFEKKMK
VKQFLFRKGFDLDTIDHVLDKGE

Nucleotide


Download         Length: 792 bp        

>NTDB_id=995135 AAVD42_RS15965 WP_345807158.1 2942743..2943534(+) (recX) [Bacillus pumilus strain FUA2116]
ATGCCCTATATTACAAAAATCTCCGCTCAGAAAAACAATACAGAGCGGGTGAACATCTTTCTTGATGAAAAGTACGCCTT
TAGCGTTGATCTAGATGTGCTCGTCCAGCACGATTTGAAAAAAGGGAAAGAGCTGGACGAAGCAGATATCATCGACATTC
AATTCGGTGATGCTGTGAAAAAAGGATTTCAACAGGCCGTCGATTATTTATCCTACCGAATGAGATCGGTGAAAGAAGTA
ACCGATTATTTGACGAAAAAAGAAATCCCGGCACCTGCTATTAGTGAAATTATACACAAATTAAAGCATTACAAGTATGT
AAATGATCTTGAATTTGCGGAAGCCTATGTAAGCACCCACCGTAAAACGAACAGCAAAGGGCCGTCCGTCCTGAAAAAAG
AGCTAAAGCTCAAAGGAATAGATGATGACAACATTGAACAAGCACTATCGCAATATCCTGATGACTTACAGCTGGAGGAA
GCTGTGAAGCAGGTTCAGAAGCTTGTGAGAAAAGAAAAAAATCGTTCCGCAAAAGAGATCGAGCAGCGCATCAAGCTGCA
GCTACAGCGAAAGGGATTTTCGTTTGGGATCATTGATAAAGCCATTCAAGAAGCCTATGATGGACAAGAAGAGGAAAAGG
AAGAAGAAGCGCTCCTTTATATGATGGAGAAGGCAAAACGCAAGGTAGGATATGACGGATCATTTGAAAAGAAGATGAAA
GTGAAGCAATTTTTATTCAGAAAAGGCTTTGATCTCGACACAATTGATCACGTTTTAGACAAAGGGGAATGA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(196-261)

RecX family (RecX_HTH2)

(84-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

62.738

100

0.627

Multiple sequence alignment