Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AAVD42_RS13745 Genome accession   NZ_CP154908
Coordinates   2430905..2431333 (-) Length   142 a.a.
NCBI ID   WP_044140469.1    Uniprot ID   A0AB34QU23
Organism   Bacillus pumilus strain FUA2116     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2425905..2436333
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVD42_RS13705 (AAVD42_13705) - 2426027..2426899 (-) 873 WP_345806918.1 transporter substrate-binding domain-containing protein -
  AAVD42_RS13710 (AAVD42_13710) - 2427080..2427403 (+) 324 WP_106029719.1 YckD family protein -
  AAVD42_RS13715 (AAVD42_13715) - 2427459..2428223 (-) 765 WP_345806919.1 MBL fold metallo-hydrolase -
  AAVD42_RS13720 (AAVD42_13720) - 2428339..2428755 (+) 417 WP_345806920.1 Lrp/AsnC family transcriptional regulator -
  AAVD42_RS13725 (AAVD42_13725) - 2428785..2429591 (+) 807 WP_345806921.1 AAC(3) family N-acetyltransferase -
  AAVD42_RS13730 (AAVD42_13730) - 2429593..2429979 (-) 387 WP_345806922.1 competence protein ComJ -
  AAVD42_RS13735 (AAVD42_13735) - 2430100..2430597 (-) 498 Protein_2504 methyl-accepting chemotaxis protein -
  AAVD42_RS13740 (AAVD42_13740) - 2430617..2430778 (-) 162 WP_345806923.1 hypothetical protein -
  AAVD42_RS13745 (AAVD42_13745) nucA/comI 2430905..2431333 (-) 429 WP_044140469.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  AAVD42_RS13750 (AAVD42_13750) - 2431701..2433770 (+) 2070 WP_345806924.1 hydantoinase/oxoprolinase family protein -
  AAVD42_RS13755 (AAVD42_13755) - 2433760..2435745 (+) 1986 WP_345806925.1 hydantoinase B/oxoprolinase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15927.84 Da        Isoelectric Point: 5.5491

>NTDB_id=995133 AAVD42_RS13745 WP_044140469.1 2430905..2431333(-) (nucA/comI) [Bacillus pumilus strain FUA2116]
MKLLKIILLLLLIVVGVATGYIQLEQSKQETTNSSYDKTIHFPSDRYPETAKHIEEAIDEGHSSVCTIDRKHSDEQREQS
LHGIPTKRGYDRDEWPMAMCKEGGTGASVKYINPSDNRGAGSWVGHQLSDDPDGTRIQFIID

Nucleotide


Download         Length: 429 bp        

>NTDB_id=995133 AAVD42_RS13745 WP_044140469.1 2430905..2431333(-) (nucA/comI) [Bacillus pumilus strain FUA2116]
ATGAAACTTCTTAAAATCATTCTCTTGCTTTTACTGATCGTCGTTGGTGTAGCAACAGGCTATATTCAGCTGGAGCAAAG
TAAACAAGAGACGACGAATTCATCTTATGACAAAACGATTCACTTCCCATCGGATCGTTACCCCGAAACCGCTAAGCATA
TAGAAGAGGCCATTGATGAAGGCCATTCATCCGTATGTACGATTGACCGTAAACATAGCGATGAACAAAGAGAACAATCA
CTTCATGGCATCCCAACAAAGCGCGGGTATGATCGGGACGAATGGCCGATGGCGATGTGTAAGGAAGGAGGAACAGGAGC
TTCAGTCAAATATATTAATCCTTCAGATAATAGAGGAGCAGGCTCATGGGTCGGTCATCAATTATCGGATGATCCTGACG
GCACAAGAATACAATTTATCATCGATTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(46-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

66.116

85.211

0.563

Multiple sequence alignment