Detailed information
Bioinformatically predicted
Overview
| Name | clpC | Type | Regulator |
| Locus tag | AAVD42_RS12330 | Genome accession | NZ_CP154908 |
| Coordinates | 2166833..2169268 (+) | Length | 811 a.a. |
| NCBI ID | WP_034665649.1 | Uniprot ID | - |
| Organism | Bacillus pumilus strain FUA2116 | ||
| Function | degradation of ComK; degradation of DegU (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2161833..2174268
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAVD42_RS12315 (AAVD42_12315) | - | 2164704..2165168 (+) | 465 | WP_003217184.1 | CtsR family transcriptional regulator | - |
| AAVD42_RS12320 (AAVD42_12320) | - | 2165183..2165740 (+) | 558 | WP_034620770.1 | UvrB/UvrC motif-containing protein | - |
| AAVD42_RS12325 (AAVD42_12325) | - | 2165745..2166836 (+) | 1092 | WP_065097645.1 | protein arginine kinase | - |
| AAVD42_RS12330 (AAVD42_12330) | clpC | 2166833..2169268 (+) | 2436 | WP_034665649.1 | ATP-dependent protease ATP-binding subunit ClpC | Regulator |
| AAVD42_RS12335 (AAVD42_12335) | radA | 2169362..2170741 (+) | 1380 | WP_034620767.1 | DNA repair protein RadA | Machinery gene |
| AAVD42_RS12340 (AAVD42_12340) | disA | 2170744..2171823 (+) | 1080 | WP_106066797.1 | DNA integrity scanning diadenylate cyclase DisA | - |
| AAVD42_RS12345 (AAVD42_12345) | - | 2171977..2173077 (+) | 1101 | WP_282062376.1 | PIN/TRAM domain-containing protein | - |
| AAVD42_RS12350 (AAVD42_12350) | ispD | 2173091..2173780 (+) | 690 | WP_034665643.1 | 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase | - |
| AAVD42_RS12355 (AAVD42_12355) | ispF | 2173784..2174260 (+) | 477 | WP_003216928.1 | 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase | - |
Sequence
Protein
Download Length: 811 a.a. Molecular weight: 90039.79 Da Isoelectric Point: 6.2471
>NTDB_id=995131 AAVD42_RS12330 WP_034665649.1 2166833..2169268(+) (clpC) [Bacillus pumilus strain FUA2116]
MMFGRFTERAQKVLALAQEEAIRLGHKNIGTEHILLGLVREGEGIAAKALEALGLVSDKIQKEVESLIGRGQEVSQAIPH
YTPRAKKVTELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNETGASAAGSNSNAN
TPTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIIHNEVPEILRDKRV
MTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDE
YRKYIEKDAALERRFQPIQVDQPSVDESIQILRGLRDRYEAHHRVSITDEAIEAAVKLSDRYISDRFLPDKAIDLIDEAG
SKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREKVEVTKKSWKEKQGQENSEVSVDDIAMV
VSSWTGVPVSKIAQTETDKLLNMEQLLHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALA
ESIFGDEEAMIRIDMSEYMEKHSTSRLVGSPPGYVGYEEGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRL
TDSKGRTVDFRNTILIMTSNVGASELKRNKYVGFNVQDEGQNYKDMKGKVMGELKRAFRPEFINRIDEIIVFHSLEKKHL
KEIVSLMSDQLTKRLKEQDLSIELTEAAKAKIADEGVDLEYGARPLRRAIQKHVEDRLSEELLKGNIEKGQHIVLDVEDG
EIVVKTTAATN
MMFGRFTERAQKVLALAQEEAIRLGHKNIGTEHILLGLVREGEGIAAKALEALGLVSDKIQKEVESLIGRGQEVSQAIPH
YTPRAKKVTELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGSNETGASAAGSNSNAN
TPTLDSLARDLTAIAKEDSLDPVIGRSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQIIHNEVPEILRDKRV
MTLDMGTVVAGTKYRGEFEDRLKKVMDEIRQAGNIILFIDELHTLIGAGGAEGAIDASNILKPSLARGELQCIGATTLDE
YRKYIEKDAALERRFQPIQVDQPSVDESIQILRGLRDRYEAHHRVSITDEAIEAAVKLSDRYISDRFLPDKAIDLIDEAG
SKVRLRSFTTPPNLKELEQKLDEVRKEKDAAVQSQEFEKAASLRDTEQRLREKVEVTKKSWKEKQGQENSEVSVDDIAMV
VSSWTGVPVSKIAQTETDKLLNMEQLLHSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALA
ESIFGDEEAMIRIDMSEYMEKHSTSRLVGSPPGYVGYEEGGQLTEKVRRKPYSVVLLDEIEKAHPDVFNILLQVLEDGRL
TDSKGRTVDFRNTILIMTSNVGASELKRNKYVGFNVQDEGQNYKDMKGKVMGELKRAFRPEFINRIDEIIVFHSLEKKHL
KEIVSLMSDQLTKRLKEQDLSIELTEAAKAKIADEGVDLEYGARPLRRAIQKHVEDRLSEELLKGNIEKGQHIVLDVEDG
EIVVKTTAATN
Nucleotide
Download Length: 2436 bp
>NTDB_id=995131 AAVD42_RS12330 WP_034665649.1 2166833..2169268(+) (clpC) [Bacillus pumilus strain FUA2116]
ATGATGTTTGGAAGATTCACTGAAAGAGCTCAAAAGGTATTAGCACTTGCACAAGAAGAAGCCATTCGCCTAGGCCATAA
GAACATTGGTACTGAACACATTTTACTTGGTCTAGTACGTGAGGGTGAGGGAATCGCCGCAAAAGCGTTAGAAGCACTGG
GCCTTGTTTCAGATAAAATCCAAAAAGAAGTCGAAAGCTTGATTGGAAGAGGGCAAGAGGTGTCTCAAGCTATTCCTCAT
TATACGCCTAGAGCAAAGAAGGTCACGGAGCTTTCAATGGATGAAGCAAGAAAGCTAGGTCATTCCTATGTAGGGACAGA
ACATATTCTATTAGGTCTTATTCGCGAGGGAGAGGGTGTAGCTGCCCGCGTGTTAAATAACCTCGGAGTGAGCTTAAATA
AAGCACGTCAGCAAGTCCTGCAGCTGCTTGGCAGCAATGAAACAGGTGCATCTGCCGCTGGCTCTAACAGCAATGCAAAT
ACACCAACATTAGATAGCTTGGCAAGAGATTTAACAGCTATTGCGAAAGAAGACAGCTTGGACCCAGTCATTGGACGAAG
CAAAGAAATTCAGCGTGTCATTGAGGTACTAAGCAGAAGAACAAAAAATAACCCTGTGCTGATTGGTGAGCCTGGTGTTG
GTAAAACAGCCATCGCTGAAGGTCTTGCACAGCAAATTATTCATAATGAAGTGCCTGAAATCCTGCGCGATAAACGAGTG
ATGACACTTGATATGGGAACCGTTGTAGCGGGTACGAAATATCGTGGTGAATTTGAGGATCGTTTGAAAAAAGTCATGGA
CGAAATTCGTCAGGCAGGAAATATCATTCTCTTCATTGATGAGCTTCATACACTGATTGGTGCTGGTGGAGCAGAGGGTG
CGATTGACGCATCTAACATTCTCAAACCATCCTTAGCACGTGGAGAGCTTCAATGTATCGGGGCGACAACGTTAGATGAG
TACCGTAAATATATTGAAAAGGATGCTGCGCTTGAACGACGTTTCCAGCCAATTCAAGTAGATCAGCCATCTGTTGATGA
AAGTATTCAAATCTTAAGAGGACTTAGAGATCGTTATGAGGCACATCACCGTGTGTCCATCACAGATGAAGCGATTGAGG
CGGCGGTGAAGCTGTCTGACCGTTATATTTCTGATCGTTTCCTTCCAGATAAGGCGATTGATTTAATTGATGAGGCAGGT
TCGAAAGTCCGCTTACGTTCTTTCACAACACCGCCTAACCTAAAAGAACTAGAGCAAAAGCTAGATGAAGTACGCAAAGA
AAAGGATGCGGCTGTTCAAAGTCAAGAATTTGAAAAAGCAGCTTCTCTTCGCGATACAGAGCAGCGTTTACGTGAAAAAG
TAGAAGTCACCAAGAAATCTTGGAAAGAAAAGCAAGGACAGGAGAATTCAGAGGTATCAGTTGATGATATCGCAATGGTT
GTCTCTAGCTGGACGGGAGTGCCTGTTTCAAAAATTGCCCAAACAGAAACAGATAAGCTTCTGAATATGGAACAATTACT
CCATTCTCGTGTAATCGGGCAGGATGAAGCGGTTGTCGCTGTAGCAAAAGCTGTGAGACGTGCGCGTGCTGGTCTAAAAG
ATCCAAAACGTCCAATCGGCTCATTTATCTTCTTAGGCCCAACAGGGGTTGGTAAAACGGAGCTTGCAAGAGCACTCGCA
GAGTCTATTTTCGGTGATGAAGAAGCGATGATCCGTATCGATATGTCTGAATACATGGAGAAACACTCTACATCTAGACT
TGTTGGGTCACCTCCAGGGTATGTTGGCTATGAAGAAGGCGGACAACTGACTGAAAAAGTGAGAAGAAAACCTTATTCTG
TTGTGCTTTTAGACGAGATTGAAAAGGCGCATCCAGATGTATTCAACATCTTACTGCAAGTGTTAGAGGATGGTCGTCTA
ACTGATTCTAAAGGGCGTACCGTTGACTTTAGAAATACGATTTTGATCATGACATCCAACGTTGGAGCTAGTGAACTGAA
GCGAAATAAATATGTTGGCTTTAACGTGCAGGATGAAGGTCAAAATTACAAAGATATGAAAGGCAAAGTGATGGGCGAGT
TGAAACGTGCGTTTAGACCAGAATTCATTAACCGTATTGATGAAATCATTGTCTTCCATTCACTTGAAAAGAAACATTTA
AAAGAGATCGTTTCTCTCATGTCTGATCAATTGACGAAACGATTAAAAGAACAAGACCTTTCAATTGAATTGACAGAAGC
AGCAAAAGCGAAGATTGCCGACGAAGGTGTAGACCTTGAGTACGGTGCGCGTCCGTTAAGAAGAGCGATTCAAAAGCATG
TGGAGGATCGACTTTCTGAGGAGCTTCTGAAGGGTAATATTGAAAAAGGTCAACATATCGTATTAGATGTGGAAGATGGA
GAAATTGTCGTAAAAACGACGGCTGCTACGAACTAA
ATGATGTTTGGAAGATTCACTGAAAGAGCTCAAAAGGTATTAGCACTTGCACAAGAAGAAGCCATTCGCCTAGGCCATAA
GAACATTGGTACTGAACACATTTTACTTGGTCTAGTACGTGAGGGTGAGGGAATCGCCGCAAAAGCGTTAGAAGCACTGG
GCCTTGTTTCAGATAAAATCCAAAAAGAAGTCGAAAGCTTGATTGGAAGAGGGCAAGAGGTGTCTCAAGCTATTCCTCAT
TATACGCCTAGAGCAAAGAAGGTCACGGAGCTTTCAATGGATGAAGCAAGAAAGCTAGGTCATTCCTATGTAGGGACAGA
ACATATTCTATTAGGTCTTATTCGCGAGGGAGAGGGTGTAGCTGCCCGCGTGTTAAATAACCTCGGAGTGAGCTTAAATA
AAGCACGTCAGCAAGTCCTGCAGCTGCTTGGCAGCAATGAAACAGGTGCATCTGCCGCTGGCTCTAACAGCAATGCAAAT
ACACCAACATTAGATAGCTTGGCAAGAGATTTAACAGCTATTGCGAAAGAAGACAGCTTGGACCCAGTCATTGGACGAAG
CAAAGAAATTCAGCGTGTCATTGAGGTACTAAGCAGAAGAACAAAAAATAACCCTGTGCTGATTGGTGAGCCTGGTGTTG
GTAAAACAGCCATCGCTGAAGGTCTTGCACAGCAAATTATTCATAATGAAGTGCCTGAAATCCTGCGCGATAAACGAGTG
ATGACACTTGATATGGGAACCGTTGTAGCGGGTACGAAATATCGTGGTGAATTTGAGGATCGTTTGAAAAAAGTCATGGA
CGAAATTCGTCAGGCAGGAAATATCATTCTCTTCATTGATGAGCTTCATACACTGATTGGTGCTGGTGGAGCAGAGGGTG
CGATTGACGCATCTAACATTCTCAAACCATCCTTAGCACGTGGAGAGCTTCAATGTATCGGGGCGACAACGTTAGATGAG
TACCGTAAATATATTGAAAAGGATGCTGCGCTTGAACGACGTTTCCAGCCAATTCAAGTAGATCAGCCATCTGTTGATGA
AAGTATTCAAATCTTAAGAGGACTTAGAGATCGTTATGAGGCACATCACCGTGTGTCCATCACAGATGAAGCGATTGAGG
CGGCGGTGAAGCTGTCTGACCGTTATATTTCTGATCGTTTCCTTCCAGATAAGGCGATTGATTTAATTGATGAGGCAGGT
TCGAAAGTCCGCTTACGTTCTTTCACAACACCGCCTAACCTAAAAGAACTAGAGCAAAAGCTAGATGAAGTACGCAAAGA
AAAGGATGCGGCTGTTCAAAGTCAAGAATTTGAAAAAGCAGCTTCTCTTCGCGATACAGAGCAGCGTTTACGTGAAAAAG
TAGAAGTCACCAAGAAATCTTGGAAAGAAAAGCAAGGACAGGAGAATTCAGAGGTATCAGTTGATGATATCGCAATGGTT
GTCTCTAGCTGGACGGGAGTGCCTGTTTCAAAAATTGCCCAAACAGAAACAGATAAGCTTCTGAATATGGAACAATTACT
CCATTCTCGTGTAATCGGGCAGGATGAAGCGGTTGTCGCTGTAGCAAAAGCTGTGAGACGTGCGCGTGCTGGTCTAAAAG
ATCCAAAACGTCCAATCGGCTCATTTATCTTCTTAGGCCCAACAGGGGTTGGTAAAACGGAGCTTGCAAGAGCACTCGCA
GAGTCTATTTTCGGTGATGAAGAAGCGATGATCCGTATCGATATGTCTGAATACATGGAGAAACACTCTACATCTAGACT
TGTTGGGTCACCTCCAGGGTATGTTGGCTATGAAGAAGGCGGACAACTGACTGAAAAAGTGAGAAGAAAACCTTATTCTG
TTGTGCTTTTAGACGAGATTGAAAAGGCGCATCCAGATGTATTCAACATCTTACTGCAAGTGTTAGAGGATGGTCGTCTA
ACTGATTCTAAAGGGCGTACCGTTGACTTTAGAAATACGATTTTGATCATGACATCCAACGTTGGAGCTAGTGAACTGAA
GCGAAATAAATATGTTGGCTTTAACGTGCAGGATGAAGGTCAAAATTACAAAGATATGAAAGGCAAAGTGATGGGCGAGT
TGAAACGTGCGTTTAGACCAGAATTCATTAACCGTATTGATGAAATCATTGTCTTCCATTCACTTGAAAAGAAACATTTA
AAAGAGATCGTTTCTCTCATGTCTGATCAATTGACGAAACGATTAAAAGAACAAGACCTTTCAATTGAATTGACAGAAGC
AGCAAAAGCGAAGATTGCCGACGAAGGTGTAGACCTTGAGTACGGTGCGCGTCCGTTAAGAAGAGCGATTCAAAAGCATG
TGGAGGATCGACTTTCTGAGGAGCTTCTGAAGGGTAATATTGAAAAAGGTCAACATATCGTATTAGATGTGGAAGATGGA
GAAATTGTCGTAAAAACGACGGCTGCTACGAACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| clpC | Bacillus subtilis subsp. subtilis str. 168 |
96.054 |
100 |
0.961 |
| clpC | Lactococcus lactis subsp. lactis strain DGCC12653 |
49.259 |
99.877 |
0.492 |
| clpC | Streptococcus thermophilus LMD-9 |
46.247 |
100 |
0.471 |
| clpC | Streptococcus thermophilus LMG 18311 |
45.884 |
100 |
0.467 |
| clpC | Streptococcus pneumoniae Rx1 |
45.802 |
99.877 |
0.457 |
| clpC | Streptococcus pneumoniae D39 |
45.802 |
99.877 |
0.457 |
| clpC | Streptococcus pneumoniae TIGR4 |
45.802 |
99.877 |
0.457 |
| clpC | Streptococcus mutans UA159 |
43.675 |
100 |
0.451 |
| clpC | Lactococcus lactis subsp. cremoris KW2 |
49.369 |
87.916 |
0.434 |
| clpE | Streptococcus mutans UA159 |
53.478 |
79.778 |
0.427 |
| clpE | Streptococcus pneumoniae TIGR4 |
52.713 |
79.531 |
0.419 |
| clpE | Streptococcus pneumoniae Rx1 |
52.713 |
79.531 |
0.419 |
| clpE | Streptococcus pneumoniae D39 |
52.713 |
79.531 |
0.419 |
| clpE | Streptococcus pneumoniae R6 |
52.713 |
79.531 |
0.419 |