Detailed information
Bioinformatically predicted
Overview
| Name | abrB | Type | Regulator |
| Locus tag | AAVD42_RS12000 | Genome accession | NZ_CP154908 |
| Coordinates | 2107160..2107450 (-) | Length | 96 a.a. |
| NCBI ID | WP_087975202.1 | Uniprot ID | - |
| Organism | Bacillus pumilus strain FUA2116 | ||
| Function | repression of comK; repression of rok (predicted from homology) Competence regulation |
||
Genomic Context
Location: 2102160..2112450
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAVD42_RS11960 (AAVD42_11960) | - | 2102195..2102524 (+) | 330 | WP_012008640.1 | cyclic-di-AMP receptor | - |
| AAVD42_RS11965 (AAVD42_11965) | - | 2102537..2102977 (+) | 441 | WP_044140388.1 | DUF327 family protein | - |
| AAVD42_RS11970 (AAVD42_11970) | holB | 2102989..2103978 (+) | 990 | WP_345806787.1 | DNA polymerase III subunit delta' | - |
| AAVD42_RS11975 (AAVD42_11975) | - | 2103981..2104808 (+) | 828 | WP_003217932.1 | stage 0 sporulation family protein | - |
| AAVD42_RS11980 (AAVD42_11980) | yabA | 2104823..2105176 (+) | 354 | WP_003217957.1 | DNA replication initiation control protein YabA | - |
| AAVD42_RS11985 (AAVD42_11985) | - | 2105232..2105975 (+) | 744 | WP_345806788.1 | tRNA1(Val) (adenine(37)-N6)-methyltransferase | - |
| AAVD42_RS11990 (AAVD42_11990) | - | 2105962..2106258 (+) | 297 | WP_345806789.1 | GIY-YIG nuclease family protein | - |
| AAVD42_RS11995 (AAVD42_11995) | rsmI | 2106236..2107114 (+) | 879 | WP_003217903.1 | 16S rRNA (cytidine(1402)-2'-O)-methyltransferase | - |
| AAVD42_RS12000 (AAVD42_12000) | abrB | 2107160..2107450 (-) | 291 | WP_087975202.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Regulator |
| AAVD42_RS12005 (AAVD42_12005) | metG | 2107970..2109971 (+) | 2002 | Protein_2185 | methionine--tRNA ligase | - |
| AAVD42_RS12010 (AAVD42_12010) | - | 2110053..2110820 (+) | 768 | WP_345806790.1 | TatD family hydrolase | - |
| AAVD42_RS12015 (AAVD42_12015) | - | 2111065..2112267 (+) | 1203 | WP_345806791.1 | ubiquitin-like domain-containing protein | - |
Sequence
Protein
Download Length: 96 a.a. Molecular weight: 10853.65 Da Isoelectric Point: 7.9655
>NTDB_id=995130 AAVD42_RS12000 WP_087975202.1 2107160..2107450(-) (abrB) [Bacillus pumilus strain FUA2116]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK
Nucleotide
Download Length: 291 bp
>NTDB_id=995130 AAVD42_RS12000 WP_087975202.1 2107160..2107450(-) (abrB) [Bacillus pumilus strain FUA2116]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGGCGCGTGGTGATTCCAATCGAACTTCGCCGTAC
TCTAGGAATCGCTGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCCTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTTACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGGCGCGTGGTGATTCCAATCGAACTTCGCCGTAC
TCTAGGAATCGCTGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCCTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTTACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| abrB | Bacillus subtilis subsp. subtilis str. 168 |
93.75 |
100 |
0.938 |