Detailed information NTG0995128

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: AAVD42_RS11765
• Genome accession: NZ_CP154908
• Coordinates: 2062920..2064032 (+)
• Length: 370 a.a.
• NCBI ID: WP_044139026.1
• Uniprot ID: A0AB34R1W9
• Organism: Bacillus pumilus strain FUA2116
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2057920..2069032

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
AAVD42_RS11740 (AAVD42_11740)	rnpA	2058671..2059030 (-)	360	WP_345806782.1	ribonuclease P protein component	-
AAVD42_RS11745 (AAVD42_11745)	rpmH	2059109..2059243 (-)	135	WP_081277122.1	50S ribosomal protein L34	-
AAVD42_RS11750 (AAVD42_11750)	dnaA	2059864..2061204 (+)	1341	WP_345806783.1	chromosomal replication initiator protein DnaA	-
AAVD42_RS11755 (AAVD42_11755)	dnaN	2061401..2062537 (+)	1137	WP_044139028.1	DNA polymerase III subunit beta	-
AAVD42_RS11760 (AAVD42_11760)	yaaA	2062688..2062903 (+)	216	WP_003215257.1	S4 domain-containing protein YaaA	-
AAVD42_RS11765 (AAVD42_11765)	recF	2062920..2064032 (+)	1113	WP_044139026.1	DNA replication/repair protein RecF	Machinery gene
AAVD42_RS11770 (AAVD42_11770)	-	2064050..2064295 (+)	246	WP_044139025.1	extracellular matrix/biofilm biosynthesis regulator RemA family protein	-
AAVD42_RS11775 (AAVD42_11775)	gyrB	2064353..2066269 (+)	1917	WP_044139139.1	DNA topoisomerase (ATP-hydrolyzing) subunit B	-
AAVD42_RS11780 (AAVD42_11780)	gyrA	2066500..2069001 (+)	2502	WP_345806784.1	DNA gyrase subunit A	-

Sequence

Protein

• Length: 370 a.a.
• Molecular weight: 42609.70 Da
• Isoelectric Point: 7.7388

>NTDB_id=995128 AAVD42_RS11765 WP_044139026.1 2062920..2064032(+) (recF) [Bacillus pumilus strain FUA2116]
MYIQSLALTSYRNYEHTELQFDNKVNVMIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDQDYAKIEGRVIKKNGP
LPMQLVISKKGKRGKVNHIEQQKLSHYVGALNTIMFAPEDLSLVKGSPQIRRRFLDMEIGQVSAVYLHDLSLYQKILSQR
NHYLKQLQTRKQKDQAMLEVLTEQLIDAAAKVVKRRLTFTKQLEKWAQPLHFGISRELETLTLQYHTAIEVSEASDLSKI
KNSYEESFQKLRDREIDRGVTLWGPHRDDLLFFVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVEGIDHATLKEAEIFRVASGKVID

Nucleotide

• Length: 1113 bp

>NTDB_id=995128 AAVD42_RS11765 WP_044139026.1 2062920..2064032(+) (recF) [Bacillus pumilus strain FUA2116]
ATGTACATTCAAAGTCTGGCGTTAACTTCATACCGAAACTATGAACACACCGAGCTTCAATTCGACAACAAGGTGAATGT
CATGATCGGTGAGAATGCCCAAGGTAAAACGAACTTGATGGAAGCGATCTATGTATTGTCGATGGCAAAGTCGCATCGTA
CGTCAAATGATAAAGAACTTATCCGATGGGACCAAGACTATGCTAAAATAGAAGGTAGAGTCATCAAAAAAAATGGTCCA
CTCCCTATGCAGCTCGTGATTTCAAAAAAAGGGAAAAGGGGCAAGGTCAATCACATTGAACAACAGAAGCTCAGTCATTA
TGTTGGTGCGTTAAACACCATCATGTTTGCACCAGAGGACTTAAGTCTTGTAAAGGGCAGCCCGCAAATCCGCAGAAGAT
TTCTCGATATGGAGATTGGACAAGTTTCTGCTGTCTACTTGCATGATTTATCGCTCTATCAAAAAATTCTCTCTCAGCGA
AATCATTACTTGAAACAATTGCAGACAAGAAAGCAAAAGGATCAAGCGATGCTGGAGGTTTTAACAGAGCAGTTGATTGA
TGCGGCAGCGAAAGTTGTCAAAAGACGACTGACTTTTACGAAGCAGCTCGAGAAATGGGCGCAGCCGTTGCATTTTGGCA
TTTCTAGAGAGCTAGAAACACTCACGCTCCAATACCACACGGCGATAGAGGTATCAGAAGCGTCAGACTTGTCGAAAATA
AAGAATAGCTATGAAGAATCGTTTCAGAAACTAAGAGACAGAGAAATAGACCGAGGAGTGACGCTGTGGGGACCTCATAG
AGATGACCTTCTTTTCTTTGTGAATGGTCGGGATGTTCAGACATATGGCTCTCAAGGGCAGCAAAGAACAACAGCTCTTT
CACTAAAGCTGGCAGAAATCGATTTGATACACGAAGAGATTGGAGAATATCCCATTCTTCTACTCGATGATGTTTTATCT
GAACTTGATGATTACAGACAGTCTCATTTGCTCCATACCATTCAGGGACGTGTACAGACCTTCGTCACCACAACAAGTGT
TGAAGGCATCGATCACGCCACCTTGAAAGAAGCGGAAATTTTCAGAGTAGCCAGTGGAAAAGTAATTGACTGA

Domains

Predicted by InterproScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (2-353)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Bacillus subtilis subsp. subtilis str. 168	83.469	99.73	0.832