Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   AAVD42_RS04620 Genome accession   NZ_CP154908
Coordinates   683669..684439 (-) Length   256 a.a.
NCBI ID   WP_034661344.1    Uniprot ID   -
Organism   Bacillus pumilus strain FUA2116     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 678669..689439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVD42_RS04600 (AAVD42_04600) - 678763..679584 (-) 822 WP_044139409.1 pyruvate, water dikinase regulatory protein -
  AAVD42_RS04605 (AAVD42_04605) - 679610..680248 (-) 639 WP_034620854.1 helix-turn-helix transcriptional regulator -
  AAVD42_RS04610 (AAVD42_04610) glyS 680415..682459 (-) 2045 Protein_751 glycine--tRNA ligase subunit beta -
  AAVD42_RS04615 (AAVD42_04615) glyQ 682452..683339 (-) 888 WP_003217487.1 glycine--tRNA ligase subunit alpha -
  AAVD42_RS04620 (AAVD42_04620) recO 683669..684439 (-) 771 WP_034661344.1 DNA repair protein RecO Machinery gene
  AAVD42_RS04625 (AAVD42_04625) - 684474..684617 (-) 144 WP_065098441.1 YqzL family protein -
  AAVD42_RS04630 (AAVD42_04630) era 684766..685671 (-) 906 WP_345807860.1 GTPase Era -
  AAVD42_RS04635 (AAVD42_04635) - 685664..686062 (-) 399 WP_003217296.1 cytidine deaminase -
  AAVD42_RS04640 (AAVD42_04640) - 686176..686562 (-) 387 WP_044139413.1 diacylglycerol kinase family protein -
  AAVD42_RS04645 (AAVD42_04645) ybeY 686540..687019 (-) 480 WP_065098418.1 rRNA maturation RNase YbeY -
  AAVD42_RS04650 (AAVD42_04650) - 687020..689107 (-) 2088 WP_185847299.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29244.92 Da        Isoelectric Point: 8.4348

>NTDB_id=995104 AAVD42_RS04620 WP_034661344.1 683669..684439(-) (recO) [Bacillus pumilus strain FUA2116]
MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMIESMRT
IREDLFLTAYAAYMTELLDKGTEEKKPNPYLFELLLQSLRHLNEGTDADIILFIVEVKMLSVMGMKPELDQCVHCGQKEG
QFHFSIRDNGFICQNCFSKDPYKLPLSPAAARLLRLFHYFDLSRLGQVDVKPQTKQEIRQVLDHYYEEYSGLYLKSKKFM
NQMESMKKLMGGENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=995104 AAVD42_RS04620 WP_034661344.1 683669..684439(-) (recO) [Bacillus pumilus strain FUA2116]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGGAAAATTGGTGTGATGGCAAGAGGCGCAAAAAAATCAAACAGCCGCCTGTCAGCCATAAGCCAGCCGTTTT
TATACGGAACCTTCCTGATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGCGAAATGATTGAAAGTATGCGAACC
ATTCGGGAGGATTTATTCTTGACCGCATATGCCGCATATATGACAGAGTTACTCGATAAAGGCACAGAAGAAAAAAAGCC
AAACCCTTATTTGTTTGAGCTCCTGCTTCAATCTTTGCGTCATCTGAATGAAGGCACAGATGCTGATATTATCTTATTTA
TCGTAGAGGTCAAAATGTTATCAGTGATGGGAATGAAGCCCGAACTGGATCAATGTGTCCACTGTGGTCAAAAAGAAGGG
CAGTTTCATTTCTCGATTAGAGACAACGGCTTTATTTGCCAAAATTGCTTTTCTAAAGATCCGTATAAACTGCCCTTATC
TCCAGCAGCTGCAAGGCTGCTCCGTTTATTTCATTATTTTGATTTATCAAGGCTCGGTCAGGTTGATGTGAAACCGCAGA
CGAAACAAGAAATTCGTCAAGTGCTCGATCACTACTATGAAGAGTATTCAGGCCTTTATTTGAAATCAAAAAAATTCATG
AATCAGATGGAATCCATGAAAAAGCTCATGGGTGGGGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

75.781

100

0.758

Multiple sequence alignment