Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AAVD42_RS04100 Genome accession   NZ_CP154908
Coordinates   595421..597157 (-) Length   578 a.a.
NCBI ID   WP_345807826.1    Uniprot ID   -
Organism   Bacillus pumilus strain FUA2116     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 590421..602157
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVD42_RS04080 (AAVD42_04080) - 591299..592399 (-) 1101 WP_065098377.1 Rap family tetratricopeptide repeat protein -
  AAVD42_RS04085 (AAVD42_04085) - 592387..592584 (-) 198 WP_034661994.1 hypothetical protein -
  AAVD42_RS04090 (AAVD42_04090) spo0A 592856..593659 (-) 804 WP_003215740.1 sporulation transcription factor Spo0A Regulator
  AAVD42_RS04095 (AAVD42_04095) spoIVB 593945..595222 (-) 1278 WP_003215755.1 SpoIVB peptidase -
  AAVD42_RS04100 (AAVD42_04100) recN 595421..597157 (-) 1737 WP_345807826.1 DNA repair protein RecN Machinery gene
  AAVD42_RS04105 (AAVD42_04105) argR 597191..597640 (-) 450 WP_012010523.1 transcriptional regulator ArgR -
  AAVD42_RS04110 (AAVD42_04110) - 598004..598858 (-) 855 WP_345807827.1 TlyA family RNA methyltransferase -
  AAVD42_RS04115 (AAVD42_04115) dxs 598855..600756 (-) 1902 WP_044140998.1 1-deoxy-D-xylulose-5-phosphate synthase -
  AAVD42_RS04120 (AAVD42_04120) - 600907..601797 (-) 891 WP_003215768.1 polyprenyl synthetase family protein -
  AAVD42_RS04125 (AAVD42_04125) - 601787..602047 (-) 261 WP_106029156.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 64824.69 Da        Isoelectric Point: 4.8882

>NTDB_id=995101 AAVD42_RS04100 WP_345807826.1 595421..597157(-) (recN) [Bacillus pumilus strain FUA2116]
MLAELTIKNFAIIEELTVSFEKGLTVLTGETGAGKSIMIDAVSLLVGGRGSSEFVRYGEKKAELEGLFLVPAADHPVFAL
CEEQGIDATDEMMILRRDINNNGKSICRINGKLVTISLLREVGRLLLDIHGQHDNQLLMEDENHLHLLDQFGAEEIAPAL
SQYQEAYEQYTKTAQKLKQLSENEQEMVHRLDLLQFQLEEIEAAQLEPGEDEKLQEERHQISNYEKIFSSLQNAYNALRN
EQGGLDWVGMSSSELKQVSEINDDLKKLSEQVSNSYYLLEDSTFQMRSMLDQLEFDPARLDFIESRLNEMKQLKRKYGTT
VEEILEYAAKIEEEIDQIQNRDSHLQTLKNKLDAMSRDALLEALNVSELRKKWAKKLAKQIQTELKDLYMEKSTFDTSFS
IRYAPFSSTDHPLLDGKPVQLGKNGIDQAQFVISTNPGEPMKSLSKVASGGEISRVMLAVKSIFSAKQEVTSIIFDEVDT
GVSGRVAQAIAEKIYKVAAGSQVLCITHLPQVAAMADTHLFISKRSKAGRTLTSVKPLSHEEKVSEIGRMIAGVEVTELT
KQHAKELLHQANDVKTTG

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=995101 AAVD42_RS04100 WP_345807826.1 595421..597157(-) (recN) [Bacillus pumilus strain FUA2116]
GTGTTAGCAGAACTAACCATTAAAAACTTTGCAATCATTGAAGAGTTAACGGTTTCATTTGAAAAAGGACTCACAGTCCT
AACAGGGGAAACAGGTGCAGGGAAATCTATCATGATTGACGCTGTCTCACTTCTTGTGGGAGGTAGAGGGTCGTCTGAAT
TTGTTCGTTATGGTGAGAAAAAGGCTGAGCTGGAGGGGCTTTTTCTTGTACCAGCAGCTGACCATCCTGTATTTGCTTTA
TGCGAAGAGCAGGGAATTGACGCAACGGATGAAATGATGATTCTTCGCCGTGATATTAACAATAACGGGAAAAGCATTTG
CCGCATTAATGGCAAGCTCGTTACAATCTCACTTTTACGCGAAGTAGGACGCCTTTTGCTCGATATACATGGACAGCACG
ATAACCAGTTATTGATGGAGGATGAAAATCATCTGCATTTACTCGATCAATTTGGAGCAGAAGAAATTGCACCTGCTTTG
TCACAGTATCAAGAAGCATATGAGCAATATACAAAGACAGCCCAAAAGCTAAAACAGCTCTCTGAGAATGAGCAGGAAAT
GGTGCACCGGTTAGATTTACTGCAATTTCAGCTAGAAGAGATTGAAGCGGCACAATTAGAGCCGGGAGAAGATGAGAAGC
TTCAAGAAGAGCGCCATCAGATCAGCAACTACGAAAAAATCTTTTCCTCACTCCAAAACGCCTATAATGCCTTGCGCAAT
GAGCAGGGGGGACTTGATTGGGTTGGTATGTCATCAAGCGAGCTCAAGCAGGTTTCTGAGATCAACGACGATCTGAAAAA
GCTATCCGAACAAGTGTCGAACTCTTACTATTTATTAGAGGATTCGACGTTCCAAATGCGAAGCATGCTGGATCAATTAG
AGTTCGACCCAGCACGACTTGATTTTATTGAGTCTAGGCTGAATGAAATGAAGCAGTTAAAACGAAAGTACGGGACAACG
GTTGAGGAAATTTTGGAGTATGCGGCGAAGATTGAAGAAGAAATCGATCAAATTCAAAATCGAGACAGTCACCTGCAGAC
GCTTAAAAACAAACTGGATGCAATGAGCCGTGACGCCCTGCTTGAAGCACTTAACGTTTCGGAGCTTCGTAAAAAATGGG
CCAAAAAGCTAGCGAAGCAAATTCAAACAGAACTAAAGGATTTGTATATGGAGAAGTCAACGTTTGATACATCCTTTTCC
ATTCGGTATGCGCCTTTTAGCAGCACGGATCATCCGCTGCTAGATGGAAAGCCCGTCCAGCTTGGAAAAAACGGAATCGA
CCAAGCTCAATTTGTGATTTCTACTAATCCTGGCGAACCGATGAAATCTTTATCAAAAGTTGCCTCGGGTGGAGAAATTT
CACGTGTTATGCTCGCCGTGAAAAGTATCTTCTCAGCCAAACAAGAAGTCACTTCCATTATTTTCGATGAGGTCGATACG
GGCGTAAGCGGCAGAGTTGCACAGGCGATTGCCGAAAAAATCTACAAAGTGGCGGCTGGCTCACAAGTGCTCTGCATTAC
GCACCTCCCGCAAGTAGCAGCAATGGCTGACACGCACCTCTTCATTTCTAAACGCTCTAAAGCAGGCAGAACACTGACAA
GCGTCAAACCATTAAGTCATGAAGAAAAAGTGAGTGAAATTGGCAGGATGATTGCGGGTGTGGAAGTCACTGAGCTGACA
AAACAGCACGCAAAAGAATTGCTGCATCAAGCAAATGATGTCAAAACAACAGGGTAG

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

74.913

100

0.749

Multiple sequence alignment