Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   AAVD42_RS03130 Genome accession   NZ_CP154908
Coordinates   418974..419585 (+) Length   203 a.a.
NCBI ID   WP_044141132.1    Uniprot ID   A0AB34QW36
Organism   Bacillus pumilus strain FUA2116     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 413974..424585
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVD42_RS03090 (AAVD42_03090) - 414140..415258 (+) 1119 WP_345807758.1 NADH-dependent flavin oxidoreductase -
  AAVD42_RS03095 (AAVD42_03095) - 415311..415817 (-) 507 WP_003216086.1 PTS glucose transporter subunit IIA -
  AAVD42_RS03100 (AAVD42_03100) - 415985..416404 (+) 420 WP_003215994.1 Hsp20/alpha crystallin family protein -
  AAVD42_RS03105 (AAVD42_03105) - 416425..416877 (-) 453 WP_065098283.1 YppG family protein -
  AAVD42_RS03110 (AAVD42_03110) - 416984..417355 (-) 372 WP_044141136.1 YppE family protein -
  AAVD42_RS03115 (AAVD42_03115) - 417413..417646 (-) 234 WP_223251159.1 DUF5446 family protein -
  AAVD42_RS03120 (AAVD42_03120) sspM 417843..417947 (+) 105 WP_012010346.1 acid-soluble spore protein SspM -
  AAVD42_RS03125 (AAVD42_03125) - 417971..418927 (-) 957 WP_106032577.1 DUF2515 domain-containing protein -
  AAVD42_RS03130 (AAVD42_03130) recU 418974..419585 (+) 612 WP_044141132.1 Holliday junction resolvase RecU Machinery gene
  AAVD42_RS03135 (AAVD42_03135) - 419629..422343 (+) 2715 WP_106065486.1 PBP1A family penicillin-binding protein -
  AAVD42_RS03140 (AAVD42_03140) - 422379..422888 (-) 510 WP_345807759.1 YpoC family protein -
  AAVD42_RS03145 (AAVD42_03145) nth 422885..423547 (-) 663 WP_034661035.1 endonuclease III -
  AAVD42_RS03150 (AAVD42_03150) - 423565..424269 (-) 705 WP_345807760.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 23302.46 Da        Isoelectric Point: 8.9930

>NTDB_id=995099 AAVD42_RS03130 WP_044141132.1 418974..419585(+) (recU) [Bacillus pumilus strain FUA2116]
MIRYPNGKSYQPIQPIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLPASDLFFFWERQK
LNGRKSISKDELMEAGHLMTLGYSPRIDYIKVVETLHFSDESE

Nucleotide


Download         Length: 612 bp        

>NTDB_id=995099 AAVD42_RS03130 WP_044141132.1 418974..419585(+) (recU) [Bacillus pumilus strain FUA2116]
ATGATTCGGTATCCAAACGGAAAATCGTATCAGCCCATTCAACCAATTGGGACAAAAAAAAGAATCAGCGGCGAATCCTC
TTATAGTAACCGCGGGATGACGCTTGAGGCTGACTTAAATGAAACCAACCAGTACTATTTGGTCAATGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCCGTTCAGATTGTGAATGTGGATTATCCAAAAAGAAGCGCTGCTGTGATCAAAGAAGCCTAT
TTTAAGCAATCATCCACAACAGACTATAATGGAGTGTACAAAGGGCGCTATATCGATTTTGAAGCAAAGGAGACCAAAAG
CACCACCTCGTTTCCGCTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTCGTTATTATATCCGCATTTGGCTCCGTTTATTATTTGCCCGCTTCAGATCTCTTCTTCTTCTGGGAGCGGCAGAAG
CTAAACGGCCGGAAATCCATTAGTAAAGATGAATTAATGGAAGCCGGCCACTTAATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGAAAGTGAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.772

99.507

0.724

Multiple sequence alignment