Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AAVD42_RS01765 Genome accession   NZ_CP154908
Coordinates   137050..137430 (+) Length   126 a.a.
NCBI ID   WP_223250648.1    Uniprot ID   -
Organism   Bacillus pumilus strain FUA2116     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 132050..142430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVD42_RS01755 (AAVD42_01755) - 132540..135683 (+) 3144 WP_345807619.1 bifunctional cytochrome P450/NADPH--P450 reductase -
  AAVD42_RS01760 (AAVD42_01760) - 135879..136787 (+) 909 WP_345807620.1 trypsin-like serine protease -
  AAVD42_RS01765 (AAVD42_01765) nucA/comI 137050..137430 (+) 381 WP_223250648.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  AAVD42_RS01770 (AAVD42_01770) - 137578..138426 (+) 849 WP_345807621.1 STAS domain-containing protein -
  AAVD42_RS01775 (AAVD42_01775) - 138460..139002 (-) 543 WP_044141411.1 IseA DL-endopeptidase inhibitor family protein -
  AAVD42_RS01780 (AAVD42_01780) - 139297..139731 (+) 435 WP_044141410.1 hypothetical protein -
  AAVD42_RS01785 (AAVD42_01785) lexA 139777..140397 (-) 621 WP_003212311.1 transcriptional repressor LexA -
  AAVD42_RS01790 (AAVD42_01790) yneA 140557..140868 (+) 312 WP_278179304.1 cell division suppressor protein YneA -
  AAVD42_RS01795 (AAVD42_01795) - 140886..141533 (+) 648 WP_003211322.1 recombinase family protein -
  AAVD42_RS01800 (AAVD42_01800) - 141603..141833 (+) 231 WP_003211509.1 DUF896 domain-containing protein -

Sequence

Protein


Download         Length: 126 a.a.        Molecular weight: 13829.48 Da        Isoelectric Point: 7.3831

>NTDB_id=995098 AAVD42_RS01765 WP_223250648.1 137050..137430(+) (nucA/comI) [Bacillus pumilus strain FUA2116]
MVTLLGGFGEEHAAKGADRYDHVIQFPKERYPETGSHIQEAIRKGHSDVCTIDRNGADARRQESLKGIPTKPGFDRDEWP
MAVCLEGGKGASVQYVSPSDNRGAGSWTGHQMSGYPDGKRILFIVK

Nucleotide


Download         Length: 381 bp        

>NTDB_id=995098 AAVD42_RS01765 WP_223250648.1 137050..137430(+) (nucA/comI) [Bacillus pumilus strain FUA2116]
ATGGTCACGCTGTTAGGTGGATTTGGGGAGGAACATGCAGCAAAAGGTGCGGATCGATATGATCATGTCATTCAATTTCC
AAAGGAACGATACCCTGAAACAGGCAGTCATATTCAAGAAGCCATTCGAAAAGGGCATTCCGATGTGTGTACGATAGACC
GAAATGGGGCAGATGCCCGCAGGCAAGAATCATTAAAAGGCATTCCGACTAAACCCGGATTCGACCGAGATGAGTGGCCG
ATGGCAGTTTGTCTTGAAGGAGGAAAAGGGGCGAGTGTTCAATATGTCAGCCCGTCTGATAATAGGGGAGCGGGCTCATG
GACCGGACACCAGATGAGCGGGTATCCTGATGGAAAAAGAATTTTATTTATTGTGAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(29-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

57.143

94.444

0.54

Multiple sequence alignment