Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   AAVC94_RS11545 Genome accession   NZ_CP154906
Coordinates   2273605..2274375 (-) Length   256 a.a.
NCBI ID   WP_345808562.1    Uniprot ID   -
Organism   Bacillus pumilus strain FUA2115     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2268605..2279375
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVC94_RS11525 (AAVC94_11525) - 2268697..2269518 (-) 822 WP_008342399.1 pyruvate, water dikinase regulatory protein -
  AAVC94_RS11530 (AAVC94_11530) - 2269544..2270182 (-) 639 WP_034620854.1 helix-turn-helix transcriptional regulator -
  AAVC94_RS11535 (AAVC94_11535) glyS 2270349..2272394 (-) 2046 WP_345808561.1 glycine--tRNA ligase subunit beta -
  AAVC94_RS11540 (AAVC94_11540) glyQ 2272387..2273274 (-) 888 WP_003217487.1 glycine--tRNA ligase subunit alpha -
  AAVC94_RS11545 (AAVC94_11545) recO 2273605..2274375 (-) 771 WP_345808562.1 DNA repair protein RecO Machinery gene
  AAVC94_RS11550 (AAVC94_11550) - 2274411..2274554 (-) 144 WP_003217288.1 YqzL family protein -
  AAVC94_RS11555 (AAVC94_11555) era 2274703..2275608 (-) 906 WP_003217394.1 GTPase Era -
  AAVC94_RS11560 (AAVC94_11560) - 2275601..2275999 (-) 399 WP_003217296.1 cytidine deaminase -
  AAVC94_RS11565 (AAVC94_11565) - 2276113..2276499 (-) 387 WP_003217363.1 diacylglycerol kinase family protein -
  AAVC94_RS11570 (AAVC94_11570) ybeY 2276477..2276956 (-) 480 WP_012010615.1 rRNA maturation RNase YbeY -
  AAVC94_RS11575 (AAVC94_11575) - 2276957..2279044 (-) 2088 WP_345808818.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 29278.96 Da        Isoelectric Point: 8.4286

>NTDB_id=995073 AAVC94_RS11545 WP_345808562.1 2273605..2274375(-) (recO) [Bacillus pumilus strain FUA2115]
MLIKSEGIVLRTTDYGETNKIVTLLTREHGKIGVMARGAKKSNSRLSAISQPFLYGTFLIQSSTGLGTLQQGEMIESMRT
IREDLFLTAYAAYMTELLDKGTEEKKPNPYLFELLLQSLRHLNEGTDADIILFIVEVKMLSVMGMKPELDQCVHCGQKEG
QFHFSIRDNGFICQNCYSKDPYKMPLSPAAARLLRLFHYFDLSRLGQVDVKPQTKQEIRQVLDHYYEEYSGLYLKSKKFM
NQMESMKKLMGGENKS

Nucleotide


Download         Length: 771 bp        

>NTDB_id=995073 AAVC94_RS11545 WP_345808562.1 2273605..2274375(-) (recO) [Bacillus pumilus strain FUA2115]
ATGCTCATTAAAAGTGAAGGAATCGTCCTTAGAACAACAGATTATGGCGAAACAAACAAAATTGTCACGCTGCTCACTAG
AGAACATGGGAAAATTGGTGTGATGGCAAGAGGCGCAAAAAAATCAAACAGCCGCCTGTCAGCCATAAGCCAGCCGTTTT
TATACGGAACCTTCCTGATCCAATCATCAACAGGACTTGGAACGCTCCAGCAAGGCGAAATGATTGAAAGTATGCGAACC
ATTCGGGAGGATTTATTTTTGACCGCATATGCCGCATATATGACAGAGTTACTCGATAAAGGTACAGAAGAAAAAAAGCC
AAACCCTTATTTGTTTGAGCTCCTGCTTCAATCTTTGCGTCATCTGAATGAAGGCACAGATGCTGATATTATCTTATTTA
TCGTAGAGGTCAAAATGTTATCAGTGATGGGAATGAAGCCCGAACTGGATCAATGTGTCCACTGTGGTCAAAAAGAAGGG
CAGTTTCATTTCTCGATTAGAGACAACGGCTTTATTTGCCAAAATTGTTATTCTAAAGATCCGTATAAAATGCCCTTATC
TCCAGCAGCTGCAAGGCTGCTCCGTTTATTTCATTATTTTGATTTATCAAGGCTCGGTCAGGTTGATGTGAAACCGCAGA
CGAAACAAGAAATTCGTCAAGTGCTCGATCACTACTATGAAGAGTATTCAGGCCTTTATTTGAAATCAAAAAAATTCATG
AATCAGATGGAATCCATGAAAAAGCTCATGGGCGGGGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-77)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

75.391

100

0.754

Multiple sequence alignment