Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   AAVC94_RS10075 Genome accession   NZ_CP154906
Coordinates   2013782..2014393 (+) Length   203 a.a.
NCBI ID   WP_044141132.1    Uniprot ID   A0AB34QW36
Organism   Bacillus pumilus strain FUA2115     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2008782..2019393
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVC94_RS10035 (AAVC94_10035) - 2008948..2010066 (+) 1119 WP_268458300.1 NADH-dependent flavin oxidoreductase -
  AAVC94_RS10040 (AAVC94_10040) - 2010119..2010625 (-) 507 WP_003216086.1 PTS glucose transporter subunit IIA -
  AAVC94_RS10045 (AAVC94_10045) - 2010793..2011212 (+) 420 WP_003215994.1 Hsp20/alpha crystallin family protein -
  AAVC94_RS10050 (AAVC94_10050) - 2011233..2011685 (-) 453 WP_137055056.1 YppG family protein -
  AAVC94_RS10055 (AAVC94_10055) - 2011792..2012172 (-) 381 WP_339159990.1 YppE family protein -
  AAVC94_RS10060 (AAVC94_10060) - 2012221..2012454 (-) 234 WP_223251159.1 DUF5446 family protein -
  AAVC94_RS10065 (AAVC94_10065) sspM 2012651..2012755 (+) 105 WP_012010346.1 acid-soluble spore protein SspM -
  AAVC94_RS10070 (AAVC94_10070) - 2012779..2013735 (-) 957 WP_253622475.1 DUF2515 domain-containing protein -
  AAVC94_RS10075 (AAVC94_10075) recU 2013782..2014393 (+) 612 WP_044141132.1 Holliday junction resolvase RecU Machinery gene
  AAVC94_RS10080 (AAVC94_10080) - 2014437..2017151 (+) 2715 WP_003216026.1 PBP1A family penicillin-binding protein -
  AAVC94_RS10085 (AAVC94_10085) - 2017186..2017695 (-) 510 WP_003215857.1 YpoC family protein -
  AAVC94_RS10090 (AAVC94_10090) nth 2017692..2018354 (-) 663 WP_012010351.1 endonuclease III -
  AAVC94_RS10095 (AAVC94_10095) - 2018372..2019076 (-) 705 WP_034661036.1 DnaD domain-containing protein -

Sequence

Protein


Download         Length: 203 a.a.        Molecular weight: 23302.46 Da        Isoelectric Point: 8.9930

>NTDB_id=995067 AAVC94_RS10075 WP_044141132.1 2013782..2014393(+) (recU) [Bacillus pumilus strain FUA2115]
MIRYPNGKSYQPIQPIGTKKRISGESSYSNRGMTLEADLNETNQYYLVNGIAVIHKKPTPVQIVNVDYPKRSAAVIKEAY
FKQSSTTDYNGVYKGRYIDFEAKETKSTTSFPLKNFHDHQIEHMKQVEKQGGICFVIISAFGSVYYLPASDLFFFWERQK
LNGRKSISKDELMEAGHLMTLGYSPRIDYIKVVETLHFSDESE

Nucleotide


Download         Length: 612 bp        

>NTDB_id=995067 AAVC94_RS10075 WP_044141132.1 2013782..2014393(+) (recU) [Bacillus pumilus strain FUA2115]
ATGATTCGGTATCCAAACGGAAAATCGTATCAGCCCATTCAACCAATTGGGACAAAAAAAAGAATCAGCGGCGAATCCTC
TTATAGTAACCGCGGGATGACGCTTGAAGCTGACTTAAATGAAACCAACCAGTACTATTTGGTCAATGGGATCGCAGTCA
TTCATAAAAAGCCTACCCCCGTTCAGATTGTGAATGTGGATTATCCAAAAAGAAGCGCTGCTGTGATCAAAGAAGCCTAT
TTTAAGCAATCATCCACAACAGACTATAATGGAGTGTACAAAGGGCGCTATATCGATTTTGAAGCAAAGGAGACCAAAAG
CACCACCTCGTTTCCGCTCAAAAATTTCCACGACCATCAAATTGAGCATATGAAACAGGTTGAAAAGCAAGGCGGTATTT
GTTTCGTTATTATATCCGCATTTGGCTCCGTTTATTATTTGCCCGCTTCAGATCTCTTTTTCTTCTGGGAGCGGCAGAAG
CTAAACGGCCGGAAATCCATTAGTAAAGATGAATTAATGGAAGCCGGCCACTTAATGACACTTGGATATTCGCCAAGAAT
TGATTATATTAAAGTAGTGGAGACACTTCATTTTTCGGATGAAAGTGAGTAG

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

72.772

99.507

0.724

Multiple sequence alignment