Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   AAVC94_RS07825 Genome accession   NZ_CP154906
Coordinates   1550845..1551747 (+) Length   300 a.a.
NCBI ID   WP_253622620.1    Uniprot ID   -
Organism   Bacillus pumilus strain FUA2115     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1545845..1556747
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVC94_RS07805 (AAVC94_07805) - 1546511..1548247 (+) 1737 WP_253622621.1 glycosyltransferase -
  AAVC94_RS07810 (AAVC94_07810) - 1548244..1548519 (+) 276 WP_003211418.1 FlhB-like flagellar biosynthesis protein -
  AAVC94_RS07815 (AAVC94_07815) sucC 1548696..1549856 (+) 1161 WP_003211841.1 ADP-forming succinate--CoA ligase subunit beta -
  AAVC94_RS07820 (AAVC94_07820) sucD 1549879..1550781 (+) 903 WP_003212080.1 succinate--CoA ligase subunit alpha -
  AAVC94_RS07825 (AAVC94_07825) dprA 1550845..1551747 (+) 903 WP_253622620.1 DNA-processing protein DprA Machinery gene
  AAVC94_RS07830 (AAVC94_07830) topA 1551941..1554016 (+) 2076 WP_003212237.1 type I DNA topoisomerase -
  AAVC94_RS07835 (AAVC94_07835) trmFO 1554087..1555391 (+) 1305 WP_003212444.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  AAVC94_RS07840 (AAVC94_07840) xerC 1555454..1556371 (+) 918 WP_003211704.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34122.42 Da        Isoelectric Point: 8.5869

>NTDB_id=995062 AAVC94_RS07825 WP_253622620.1 1550845..1551747(+) (dprA) [Bacillus pumilus strain FUA2115]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHYKQDRSLQTIDFTRLKQAEEKEFPIFQHIVQAYLKQNIHM
IPITSPLYPSTLKHIYDPPPVLFLKGNISYLNEEKSLGVVGTRVPSSYGEACVKKIVGELVKEEWTIVSGLAKGIDGLAH
KECIRNKGKTIGIIAGGFQHLYPKEHVQMAEYMGEHHLLLSEHPPYVKPEKWHFPLRNRLISALTSGTIVIQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDPNSTGPARLIQQGAKLVHSTKDILEEFSFRSVQYTELS

Nucleotide


Download         Length: 903 bp        

>NTDB_id=995062 AAVC94_RS07825 WP_253622620.1 1550845..1551747(+) (dprA) [Bacillus pumilus strain FUA2115]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCTTTGTTAACAAAATGGTGGAA
AGTCGATCCTGAGCTATATATAAATGAAGAAACACATCATTACAAACAGGATCGATCATTACAAACAATCGACTTTACCC
GCTTAAAACAAGCCGAAGAAAAAGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAACATTCACATG
ATTCCCATCACATCACCCTTATATCCCAGCACACTAAAACATATTTATGATCCTCCCCCTGTGTTATTCCTAAAAGGAAA
CATATCGTATTTAAATGAAGAAAAAAGTTTAGGTGTAGTAGGCACACGAGTTCCATCGTCTTATGGAGAAGCATGTGTGA
AGAAAATTGTTGGTGAGCTTGTAAAGGAAGAGTGGACGATTGTCAGTGGCTTAGCAAAAGGCATTGATGGACTTGCACAT
AAAGAGTGCATTAGGAATAAAGGGAAAACGATCGGTATTATAGCAGGCGGATTTCAGCACTTATACCCAAAGGAACATGT
GCAAATGGCTGAATACATGGGCGAGCATCATTTGCTTTTATCTGAGCATCCGCCTTACGTCAAACCAGAAAAGTGGCATT
TCCCTTTGAGGAATCGTTTAATTAGTGCGCTCACAAGTGGAACCATCGTGATTCAGTGCAAAGAAAAGAGCGGTTCACTC
ATTACCGCCTATCAAGCACTTGAGCAAGGCAAAGAGGTATTTGCGGTTGCAGGATCAATCTTTGATCCTAATTCCACAGG
TCCAGCCAGACTTATACAGCAGGGAGCAAAGCTTGTTCATTCAACGAAGGATATTTTAGAGGAATTCTCCTTCCGCAGCG
TTCAATATACTGAACTCTCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

54.704

95.667

0.523
  dprA Lactococcus lactis subsp. cremoris KW2

38.889

96

0.373

Multiple sequence alignment