Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   AAVC94_RS06740 Genome accession   NZ_CP154906
Coordinates   1344923..1345384 (-) Length   153 a.a.
NCBI ID   WP_012009774.1    Uniprot ID   A0AAE4B719
Organism   Bacillus pumilus strain FUA2115     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1339923..1350384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVC94_RS06715 (AAVC94_06715) - 1340532..1341416 (+) 885 WP_106029794.1 cation diffusion facilitator family transporter -
  AAVC94_RS06720 (AAVC94_06720) - 1341478..1341630 (-) 153 WP_170965990.1 hypothetical protein -
  AAVC94_RS06725 (AAVC94_06725) - 1341932..1342471 (+) 540 WP_044139812.1 RDD family protein -
  AAVC94_RS06730 (AAVC94_06730) - 1342597..1343907 (+) 1311 WP_253622662.1 MFS transporter -
  AAVC94_RS06735 (AAVC94_06735) - 1343981..1344889 (+) 909 WP_003212225.1 chemotaxis protein -
  AAVC94_RS06740 (AAVC94_06740) kre 1344923..1345384 (-) 462 WP_012009774.1 YkyB family protein Regulator
  AAVC94_RS06745 (AAVC94_06745) - 1345610..1346503 (-) 894 WP_253622661.1 AraC family transcriptional regulator -
  AAVC94_RS06750 (AAVC94_06750) - 1346616..1347513 (+) 898 Protein_1264 DMT family transporter -
  AAVC94_RS06755 (AAVC94_06755) - 1347709..1347924 (-) 216 WP_106029790.1 hypothetical protein -
  AAVC94_RS06760 (AAVC94_06760) - 1348104..1348265 (-) 162 WP_170965988.1 hypothetical protein -
  AAVC94_RS06765 (AAVC94_06765) - 1348266..1349543 (-) 1278 WP_212045814.1 MFS transporter -
  AAVC94_RS06770 (AAVC94_06770) - 1349617..1350114 (-) 498 WP_034619946.1 L,D-transpeptidase family protein -

Sequence

Protein


Download         Length: 153 a.a.        Molecular weight: 17741.33 Da        Isoelectric Point: 10.2452

>NTDB_id=995059 AAVC94_RS06740 WP_012009774.1 1344923..1345384(-) (kre) [Bacillus pumilus strain FUA2115]
MDDYAHTKDIEPTAENIAKAIYTVNRHAKTAPNPKFLYLLKKRALQKLLQEGKGRKVGLHFSNNPKYSQQQSDVLIEIGD
YYFHLPPTKEDFEFLPHLGNLNQSYRNPKANMSLNRAKQLLQTYVGLKEKPTATKQKSHYTKPVFKRLGESYF

Nucleotide


Download         Length: 462 bp        

>NTDB_id=995059 AAVC94_RS06740 WP_012009774.1 1344923..1345384(-) (kre) [Bacillus pumilus strain FUA2115]
ATGGACGATTATGCTCATACTAAAGACATAGAACCTACAGCAGAAAACATCGCAAAAGCCATTTATACTGTTAACCGCCA
TGCTAAAACCGCACCAAATCCCAAGTTTCTTTATCTTTTGAAAAAACGTGCGCTGCAAAAACTATTGCAAGAAGGTAAAG
GAAGAAAAGTGGGCCTACATTTCTCTAACAATCCCAAATATAGTCAACAACAGTCCGACGTGCTGATTGAAATTGGAGAT
TATTATTTTCACCTGCCACCAACCAAAGAAGACTTCGAATTTTTGCCACACTTAGGAAATTTAAATCAATCATATCGCAA
TCCGAAAGCGAATATGTCATTAAACCGAGCAAAGCAACTGCTTCAAACGTATGTCGGTTTAAAAGAAAAACCTACCGCCA
CAAAACAAAAATCACATTATACAAAGCCCGTCTTCAAACGACTCGGAGAAAGTTATTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

76.623

100

0.771

Multiple sequence alignment