Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AAVC94_RS02030 Genome accession   NZ_CP154906
Coordinates   353441..353869 (-) Length   142 a.a.
NCBI ID   WP_003214307.1    Uniprot ID   -
Organism   Bacillus pumilus strain FUA2115     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 348441..358869
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVC94_RS02000 (AAVC94_02000) - 348597..348926 (+) 330 WP_050943461.1 YckD family protein -
  AAVC94_RS02005 (AAVC94_02005) - 348976..349740 (-) 765 WP_253621872.1 MBL fold metallo-hydrolase -
  AAVC94_RS02010 (AAVC94_02010) - 349856..350272 (+) 417 WP_253621871.1 Lrp/AsnC family transcriptional regulator -
  AAVC94_RS02015 (AAVC94_02015) - 350302..351108 (+) 807 WP_050943235.1 AAC(3) family N-acetyltransferase -
  AAVC94_RS02020 (AAVC94_02020) - 351110..351496 (-) 387 WP_050943233.1 competence protein ComJ -
  AAVC94_RS02025 (AAVC94_02025) - 351617..353314 (-) 1698 WP_253621870.1 methyl-accepting chemotaxis protein -
  AAVC94_RS02030 (AAVC94_02030) nucA/comI 353441..353869 (-) 429 WP_003214307.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  AAVC94_RS02035 (AAVC94_02035) - 354237..356306 (+) 2070 WP_253621869.1 hydantoinase/oxoprolinase family protein -
  AAVC94_RS02040 (AAVC94_02040) - 356296..358281 (+) 1986 WP_253621868.1 hydantoinase B/oxoprolinase family protein -

Sequence

Protein


Download         Length: 142 a.a.        Molecular weight: 15914.84 Da        Isoelectric Point: 5.5536

>NTDB_id=995042 AAVC94_RS02030 WP_003214307.1 353441..353869(-) (nucA/comI) [Bacillus pumilus strain FUA2115]
MKLLKIILLLLLIVVGVATGYIQLEQSKQETTNSSYDKTIHFPSERYPETAKHIEEAIDEGHSSVCTIDRKHSDEQREQS
LHGIPTKRGYDRDEWPMAMCKEGGTGASVKYISPSDNRGAGSWVGHQLSDDPDGTRIQFIID

Nucleotide


Download         Length: 429 bp        

>NTDB_id=995042 AAVC94_RS02030 WP_003214307.1 353441..353869(-) (nucA/comI) [Bacillus pumilus strain FUA2115]
ATGAAACTTCTTAAAATCATTCTCTTGCTTTTACTGATCGTCGTTGGTGTAGCAACAGGCTATATTCAGCTGGAGCAAAG
TAAACAAGAGACGACGAATTCATCTTATGACAAGACCATTCACTTCCCATCAGAACGTTACCCTGAAACCGCGAAGCACA
TAGAAGAGGCAATTGATGAAGGGCATTCATCCGTATGCACGATTGACCGTAAACATAGCGATGAACAAAGAGAACAATCA
CTTCATGGCATCCCAACAAAGCGCGGGTATGATCGGGACGAATGGCCGATGGCGATGTGTAAGGAAGGAGGAACAGGAGC
TTCAGTCAAATATATTAGTCCTTCAGATAATAGAGGAGCCGGCTCATGGGTCGGTCATCAATTATCGGATGATCCTGACG
GCACAAGAATACAATTTATCATCGATTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(45-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

66.116

85.211

0.563

Multiple sequence alignment