Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   EJN50_RS12045 Genome accession   NZ_LR130527
Coordinates   2518676..2519200 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa isolate paerg002     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2513676..2524200
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EJN50_RS12030 (BANRA_02343) aroB 2514792..2515898 (-) 1107 WP_003162482.1 3-dehydroquinate synthase -
  EJN50_RS12035 (BANRA_02344) aroK 2515948..2516466 (-) 519 WP_003095833.1 shikimate kinase AroK -
  EJN50_RS12040 (BANRA_02345) pilQ 2516478..2518622 (-) 2145 WP_014603377.1 type 4a pilus secretin PilQ Machinery gene
  EJN50_RS12045 (BANRA_02346) comL/pilP 2518676..2519200 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  EJN50_RS12050 (BANRA_02347) pilO 2519197..2519820 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  EJN50_RS12055 (BANRA_02348) pilN 2519817..2520413 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  EJN50_RS12060 (BANRA_02349) pilM 2520413..2521477 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  EJN50_RS12065 (BANRA_02350) - 2521662..2524130 (+) 2469 WP_003114576.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=995041 EJN50_RS12045 WP_003095836.1 2518676..2519200(-) (comL/pilP) [Pseudomonas aeruginosa isolate paerg002]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=995041 EJN50_RS12045 WP_003095836.1 2518676..2519200(-) (comL/pilP) [Pseudomonas aeruginosa isolate paerg002]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
CCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362

Multiple sequence alignment