Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   AAVC94_RS00275 Genome accession   NZ_CP154906
Coordinates   37664..37954 (-) Length   96 a.a.
NCBI ID   WP_087975202.1    Uniprot ID   -
Organism   Bacillus pumilus strain FUA2115     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 32664..42954
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVC94_RS00235 (AAVC94_00235) - 32699..33028 (+) 330 WP_012008640.1 cyclic-di-AMP receptor -
  AAVC94_RS00240 (AAVC94_00240) - 33041..33481 (+) 441 WP_044140388.1 DUF327 family protein -
  AAVC94_RS00245 (AAVC94_00245) holB 33493..34482 (+) 990 WP_212046565.1 DNA polymerase III subunit delta' -
  AAVC94_RS00250 (AAVC94_00250) - 34485..35312 (+) 828 WP_003217932.1 stage 0 sporulation family protein -
  AAVC94_RS00255 (AAVC94_00255) yabA 35327..35680 (+) 354 WP_003217957.1 DNA replication initiation control protein YabA -
  AAVC94_RS00260 (AAVC94_00260) - 35736..36479 (+) 744 WP_044140390.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  AAVC94_RS00265 (AAVC94_00265) - 36466..36762 (+) 297 WP_003217970.1 GIY-YIG nuclease family protein -
  AAVC94_RS00270 (AAVC94_00270) rsmI 36740..37618 (+) 879 WP_003217903.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  AAVC94_RS00275 (AAVC94_00275) abrB 37664..37954 (-) 291 WP_087975202.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein Regulator
  AAVC94_RS00280 (AAVC94_00280) metG 38473..40473 (+) 2001 WP_065097666.1 methionine--tRNA ligase -
  AAVC94_RS00285 (AAVC94_00285) - 40555..41322 (+) 768 WP_050945797.1 TatD family hydrolase -
  AAVC94_RS00290 (AAVC94_00290) - 41567..42769 (+) 1203 WP_253621935.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10853.65 Da        Isoelectric Point: 7.9655

>NTDB_id=995039 AAVC94_RS00275 WP_087975202.1 37664..37954(-) (abrB) [Bacillus pumilus strain FUA2115]
MKMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLANGKLVLSREG
AEQIINEIQNQLQSQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=995039 AAVC94_RS00275 WP_087975202.1 37664..37954(-) (abrB) [Bacillus pumilus strain FUA2115]
ATGAAGATGAAATCTACAGGTATTGTACGTAAAGTTGACGAATTAGGGCGCGTGGTGATTCCAATCGAACTTCGCCGTAC
TCTAGGAATCGCTGAAAAAGACGCTTTGGAAATTTATGTTGATGATGAAAAAATTATCCTAAAAAAATATAAACCAAACA
TGACTTGCCAAGTTACAGGTGAAGTATCAGACGATAACCTTAAACTTGCTAATGGTAAATTAGTTCTTAGCCGTGAAGGT
GCAGAGCAAATCATTAACGAAATCCAAAACCAACTTCAATCACAAAAATAA

Domains

Predicted by InterproScan.

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)

AbrB C-terminal domain (AbrB_C)

(55-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

93.75

100

0.938

Multiple sequence alignment