Detailed information
Bioinformatically predicted
Overview
| Name | comGA | Type | Machinery gene |
| Locus tag | AAVC22_RS19630 | Genome accession | NZ_CP154902 |
| Coordinates | 3876440..3877504 (+) | Length | 354 a.a. |
| NCBI ID | WP_025811157.1 | Uniprot ID | - |
| Organism | Bacillus paralicheniformis strain FUA2150 | ||
| Function | dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3871440..3882504
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AAVC22_RS19590 (AAVC22_19595) | - | 3871865..3872974 (+) | 1110 | WP_035338374.1 | hypothetical protein | - |
| AAVC22_RS19595 (AAVC22_19600) | - | 3872990..3873304 (+) | 315 | WP_020452182.1 | MTH1187 family thiamine-binding protein | - |
| AAVC22_RS19600 (AAVC22_19605) | - | 3873365..3873538 (-) | 174 | WP_003183486.1 | DUF2759 domain-containing protein | - |
| AAVC22_RS19605 (AAVC22_19610) | - | 3873694..3874332 (+) | 639 | WP_020452181.1 | MBL fold metallo-hydrolase | - |
| AAVC22_RS19610 (AAVC22_19615) | - | 3874368..3874613 (-) | 246 | WP_020452180.1 | DUF2626 domain-containing protein | - |
| AAVC22_RS19615 (AAVC22_19620) | - | 3874824..3875201 (+) | 378 | WP_003183482.1 | Spx/MgsR family RNA polymerase-binding regulatory protein | - |
| AAVC22_RS19625 (AAVC22_19630) | - | 3875443..3876282 (+) | 840 | WP_035338373.1 | STAS domain-containing protein | - |
| AAVC22_RS19630 (AAVC22_19635) | comGA | 3876440..3877504 (+) | 1065 | WP_025811157.1 | competence type IV pilus ATPase ComGA | Machinery gene |
| AAVC22_RS19635 (AAVC22_19640) | comGB | 3877494..3878528 (+) | 1035 | WP_035338372.1 | competence type IV pilus assembly protein ComGB | Machinery gene |
| AAVC22_RS19640 (AAVC22_19645) | comGC | 3878542..3878835 (+) | 294 | WP_020452176.1 | competence type IV pilus major pilin ComGC | Machinery gene |
| AAVC22_RS19645 (AAVC22_19650) | comGD | 3878841..3879278 (+) | 438 | WP_020452175.1 | competence type IV pilus minor pilin ComGD | - |
| AAVC22_RS19650 (AAVC22_19655) | comGE | 3879262..3879609 (+) | 348 | WP_025811161.1 | competence type IV pilus minor pilin ComGE | - |
| AAVC22_RS19655 (AAVC22_19660) | comGF | 3879524..3880006 (+) | 483 | WP_230588654.1 | competence type IV pilus minor pilin ComGF | - |
| AAVC22_RS19660 (AAVC22_19665) | comGG | 3880018..3880383 (+) | 366 | WP_025811163.1 | competence type IV pilus minor pilin ComGG | - |
| AAVC22_RS19665 (AAVC22_19670) | - | 3880472..3880654 (+) | 183 | WP_020452171.1 | YqzE family protein | - |
| AAVC22_RS19670 (AAVC22_19675) | - | 3880684..3881004 (-) | 321 | WP_023855188.1 | YqzG/YhdC family protein | - |
| AAVC22_RS19675 (AAVC22_19680) | tapA | 3881282..3882010 (+) | 729 | WP_020452169.1 | amyloid fiber anchoring/assembly protein TapA | - |
Sequence
Protein
Download Length: 354 a.a. Molecular weight: 39797.28 Da Isoelectric Point: 9.1063
>NTDB_id=995030 AAVC22_RS19630 WP_025811157.1 3876440..3877504(+) (comGA) [Bacillus paralicheniformis strain FUA2150]
MYTIESLSGRLIDEAYRMKASDIHIVPGEKEAVVRFRIDDELFQKDRLTRNECSRLISHFKFLSSMDIGERRLPQSGALT
LYINRQPVHLRMSTLPTIHDESLVIRLLPKMSSKPLTKLSLFPSATFKLLSFLKHSHGLILFTGPTGSGKTTTLYSLIEY
AKRHFKRNIITLEDPVESRSENILQVQVNEKAGMTYSAGLKAVLRHDPDMIILGEIRDAETAQIAVRAALTGHLVLSSMH
AKNAKGAIYRLLEFGVDMTEIEQTLVAISAQRLVGLVCPFCGDSCSLYCRLSRPVRRASVFELLYGKSLNLCIEEAKGRC
GDIKTETLKTLIQKGIALGYLPSNTYERWIGHED
MYTIESLSGRLIDEAYRMKASDIHIVPGEKEAVVRFRIDDELFQKDRLTRNECSRLISHFKFLSSMDIGERRLPQSGALT
LYINRQPVHLRMSTLPTIHDESLVIRLLPKMSSKPLTKLSLFPSATFKLLSFLKHSHGLILFTGPTGSGKTTTLYSLIEY
AKRHFKRNIITLEDPVESRSENILQVQVNEKAGMTYSAGLKAVLRHDPDMIILGEIRDAETAQIAVRAALTGHLVLSSMH
AKNAKGAIYRLLEFGVDMTEIEQTLVAISAQRLVGLVCPFCGDSCSLYCRLSRPVRRASVFELLYGKSLNLCIEEAKGRC
GDIKTETLKTLIQKGIALGYLPSNTYERWIGHED
Nucleotide
Download Length: 1065 bp
>NTDB_id=995030 AAVC22_RS19630 WP_025811157.1 3876440..3877504(+) (comGA) [Bacillus paralicheniformis strain FUA2150]
TTGTACACGATTGAATCATTAAGCGGAAGATTAATTGACGAGGCATATAGAATGAAGGCGTCAGACATTCATATTGTTCC
CGGTGAAAAAGAGGCGGTGGTTCGCTTCAGGATTGATGATGAACTTTTTCAAAAAGACAGATTAACGAGAAATGAGTGCT
CAAGGCTCATTTCTCACTTTAAATTCCTTTCTTCGATGGATATTGGGGAAAGACGGCTGCCGCAAAGCGGAGCTTTGACT
CTTTATATCAACCGTCAGCCCGTTCATTTAAGAATGTCCACTCTGCCCACCATCCATGATGAAAGCTTGGTCATCAGGCT
TCTTCCCAAGATGAGCAGCAAGCCGCTCACAAAGCTCTCATTGTTTCCGAGTGCAACATTCAAGCTGCTGTCTTTTCTGA
AGCATTCCCACGGATTAATTCTGTTCACCGGTCCGACAGGCTCGGGGAAAACGACAACACTCTATTCTTTAATCGAATAC
GCTAAGCGGCATTTTAAGCGAAACATCATTACCTTGGAAGACCCTGTTGAATCAAGAAGCGAAAACATTTTGCAAGTGCA
AGTAAACGAAAAAGCTGGCATGACTTATTCTGCGGGGTTGAAGGCGGTGCTTCGCCACGATCCGGACATGATCATCCTCG
GGGAAATTCGCGATGCCGAAACAGCCCAAATCGCAGTCAGGGCAGCTTTGACAGGACACCTTGTTTTATCGAGCATGCAT
GCGAAAAATGCCAAAGGCGCAATATACAGGCTGCTCGAGTTCGGCGTTGATATGACAGAAATTGAACAAACACTGGTCGC
AATCAGCGCCCAGCGCCTCGTCGGTCTCGTCTGCCCGTTTTGCGGCGACAGCTGCTCTTTATATTGCAGATTGTCGAGGC
CTGTGAGAAGAGCAAGCGTCTTCGAGCTTTTGTACGGAAAAAGCCTCAATCTCTGCATCGAAGAAGCAAAAGGCAGGTGC
GGTGACATAAAAACAGAAACTTTGAAAACGCTGATCCAGAAGGGAATAGCACTCGGATATCTGCCGTCGAATACTTATGA
ACGCTGGATAGGCCATGAAGATTAA
TTGTACACGATTGAATCATTAAGCGGAAGATTAATTGACGAGGCATATAGAATGAAGGCGTCAGACATTCATATTGTTCC
CGGTGAAAAAGAGGCGGTGGTTCGCTTCAGGATTGATGATGAACTTTTTCAAAAAGACAGATTAACGAGAAATGAGTGCT
CAAGGCTCATTTCTCACTTTAAATTCCTTTCTTCGATGGATATTGGGGAAAGACGGCTGCCGCAAAGCGGAGCTTTGACT
CTTTATATCAACCGTCAGCCCGTTCATTTAAGAATGTCCACTCTGCCCACCATCCATGATGAAAGCTTGGTCATCAGGCT
TCTTCCCAAGATGAGCAGCAAGCCGCTCACAAAGCTCTCATTGTTTCCGAGTGCAACATTCAAGCTGCTGTCTTTTCTGA
AGCATTCCCACGGATTAATTCTGTTCACCGGTCCGACAGGCTCGGGGAAAACGACAACACTCTATTCTTTAATCGAATAC
GCTAAGCGGCATTTTAAGCGAAACATCATTACCTTGGAAGACCCTGTTGAATCAAGAAGCGAAAACATTTTGCAAGTGCA
AGTAAACGAAAAAGCTGGCATGACTTATTCTGCGGGGTTGAAGGCGGTGCTTCGCCACGATCCGGACATGATCATCCTCG
GGGAAATTCGCGATGCCGAAACAGCCCAAATCGCAGTCAGGGCAGCTTTGACAGGACACCTTGTTTTATCGAGCATGCAT
GCGAAAAATGCCAAAGGCGCAATATACAGGCTGCTCGAGTTCGGCGTTGATATGACAGAAATTGAACAAACACTGGTCGC
AATCAGCGCCCAGCGCCTCGTCGGTCTCGTCTGCCCGTTTTGCGGCGACAGCTGCTCTTTATATTGCAGATTGTCGAGGC
CTGTGAGAAGAGCAAGCGTCTTCGAGCTTTTGTACGGAAAAAGCCTCAATCTCTGCATCGAAGAAGCAAAAGGCAGGTGC
GGTGACATAAAAACAGAAACTTTGAAAACGCTGATCCAGAAGGGAATAGCACTCGGATATCTGCCGTCGAATACTTATGA
ACGCTGGATAGGCCATGAAGATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comGA | Bacillus subtilis subsp. subtilis str. 168 |
67.797 |
100 |
0.678 |
| pilB | Vibrio cholerae strain A1552 |
38.671 |
93.503 |
0.362 |