Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   AAVC22_RS13545 Genome accession   NZ_CP154902
Coordinates   2738579..2739316 (+) Length   245 a.a.
NCBI ID   WP_026580174.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain FUA2150     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2733579..2744316
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVC22_RS13520 (AAVC22_13520) degS 2733875..2735032 (+) 1158 WP_020453119.1 histidine kinase Regulator
  AAVC22_RS13525 (AAVC22_13525) degU 2735114..2735803 (+) 690 WP_003185730.1 two-component system response regulator DegU Regulator
  AAVC22_RS13530 (AAVC22_13530) - 2735923..2736765 (+) 843 WP_020453118.1 DegV family protein -
  AAVC22_RS13535 (AAVC22_13535) comFA 2736889..2738283 (+) 1395 WP_020453117.1 DEAD/DEAH box helicase Machinery gene
  AAVC22_RS13540 (AAVC22_13540) - 2738338..2738622 (+) 285 WP_020453116.1 late competence development ComFB family protein -
  AAVC22_RS13545 (AAVC22_13545) comFC 2738579..2739316 (+) 738 WP_026580174.1 ComF family protein Machinery gene
  AAVC22_RS13550 (AAVC22_13550) - 2739375..2739794 (+) 420 WP_020453114.1 TIGR03826 family flagellar region protein -
  AAVC22_RS13555 (AAVC22_13555) flgM 2739874..2740140 (+) 267 WP_020453113.1 flagellar biosynthesis anti-sigma factor FlgM -
  AAVC22_RS13560 (AAVC22_13560) - 2740159..2740635 (+) 477 WP_023856391.1 flagellar protein FlgN -
  AAVC22_RS13565 (AAVC22_13565) flgK 2740651..2742174 (+) 1524 WP_043054491.1 flagellar hook-associated protein FlgK -
  AAVC22_RS13570 (AAVC22_13570) flgL 2742185..2743096 (+) 912 WP_020453110.1 flagellar hook-associated protein FlgL -
  AAVC22_RS13575 (AAVC22_13575) - 2743146..2743712 (+) 567 WP_020453109.1 DUF6470 family protein -
  AAVC22_RS13580 (AAVC22_13580) fliW 2743734..2744165 (+) 432 WP_035337783.1 flagellar assembly protein FliW -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 28124.81 Da        Isoelectric Point: 9.9151

>NTDB_id=995012 AAVC22_RS13545 WP_026580174.1 2738579..2739316(+) (comFC) [Bacillus paralicheniformis strain FUA2150]
MTTRFAKAIEKGGNELHCLICEAPLLHSLSWRALFFLRSEEKICRACKDNFIRIEGRTVCPKCGRPQESEELCGDCLKWE
ADPLTRSLLRQNRSVYIYNTFMKEVLARFKFRGDAELVFAFAPLFINAFHQYYRRTPAVLVPIPLSEERKAERGFNQAER
LASLLKKPVMHPLIRIENEKQSKKSRKERIKPKTVFRTEKGSVKNLDIILIDDLYTTGATLHHAAACLMTSGEAKSVSSF
TLIRS

Nucleotide


Download         Length: 738 bp        

>NTDB_id=995012 AAVC22_RS13545 WP_026580174.1 2738579..2739316(+) (comFC) [Bacillus paralicheniformis strain FUA2150]
ATGACAACCCGCTTTGCGAAAGCAATCGAAAAGGGAGGAAATGAACTGCATTGTTTAATTTGTGAAGCGCCTCTTTTACA
TTCTCTTTCATGGCGCGCTTTATTCTTTTTACGATCAGAAGAGAAAATATGCAGGGCATGTAAAGACAATTTTATCAGGA
TCGAAGGAAGAACGGTGTGCCCTAAGTGCGGGCGCCCCCAAGAGAGCGAAGAACTTTGCGGTGACTGCCTAAAATGGGAA
GCTGATCCGTTAACCCGCTCTCTTTTGAGGCAAAACCGCTCTGTCTATATCTACAATACCTTCATGAAAGAAGTCCTTGC
CCGTTTTAAGTTCAGAGGTGATGCTGAACTGGTCTTCGCTTTTGCTCCTTTATTTATCAATGCTTTCCACCAATATTACC
GCCGCACTCCAGCTGTTTTAGTTCCGATACCACTCAGTGAAGAACGTAAAGCGGAGCGGGGATTCAATCAGGCGGAGAGG
CTTGCTTCCTTATTAAAAAAACCCGTTATGCATCCTTTGATCAGAATCGAAAATGAAAAACAATCCAAAAAAAGCAGAAA
AGAACGGATCAAGCCCAAAACGGTTTTTAGAACCGAAAAGGGATCGGTAAAGAATCTGGATATCATATTGATCGACGACT
TGTATACGACAGGGGCGACCCTTCATCATGCCGCTGCTTGTCTGATGACATCCGGTGAGGCAAAATCTGTATCATCATTT
ACATTAATTCGAAGCTAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(17-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

53.782

97.143

0.522

Multiple sequence alignment