Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   AAVC22_RS08545 Genome accession   NZ_CP154902
Coordinates   1735501..1735947 (+) Length   148 a.a.
NCBI ID   WP_020450096.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain FUA2150     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1730501..1740947
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVC22_RS08525 (AAVC22_08525) - 1730697..1732751 (-) 2055 WP_023855670.1 hydantoinase/oxoprolinase family protein -
  AAVC22_RS08530 (AAVC22_08530) - 1733155..1733895 (+) 741 WP_020450098.1 LXG domain-containing protein -
  AAVC22_RS08535 (AAVC22_08535) - 1734219..1735022 (-) 804 WP_025810788.1 protein kinase -
  AAVC22_RS08540 (AAVC22_08540) - 1735028..1735198 (-) 171 WP_023855671.1 hypothetical protein -
  AAVC22_RS08545 (AAVC22_08545) nucA/comI 1735501..1735947 (+) 447 WP_020450096.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  AAVC22_RS08550 (AAVC22_08550) nin/comJ 1735965..1736363 (+) 399 WP_023855672.1 competence protein ComJ Regulator
  AAVC22_RS08555 (AAVC22_08555) - 1736403..1737839 (-) 1437 WP_020450094.1 family 1 glycosylhydrolase -
  AAVC22_RS08560 (AAVC22_08560) - 1737909..1738634 (-) 726 WP_020450093.1 AAA family ATPase -
  AAVC22_RS08565 (AAVC22_08565) - 1738730..1739281 (-) 552 WP_035337275.1 NAD(P)H-dependent oxidoreductase -
  AAVC22_RS08570 (AAVC22_08570) - 1739465..1740340 (+) 876 WP_020450091.1 transporter substrate-binding domain-containing protein -

Sequence

Protein


Download         Length: 148 a.a.        Molecular weight: 16280.32 Da        Isoelectric Point: 5.7093

>NTDB_id=994994 AAVC22_RS08545 WP_020450096.1 1735501..1735947(+) (nucA/comI) [Bacillus paralicheniformis strain FUA2150]
MDKIKSLLITLLAVAVVIIGIISGDFFTSEHQPSGRQNGSDYDEVLIFPSDRYPETGAHIRKAIKKGHSKICTIDRDGAD
ERRKESLKDVPSKSGYDRDEWPMAMCEEGGTGASVEYISPSDNRGAGSWVGNQVSDYPDGTKILFKIK

Nucleotide


Download         Length: 447 bp        

>NTDB_id=994994 AAVC22_RS08545 WP_020450096.1 1735501..1735947(+) (nucA/comI) [Bacillus paralicheniformis strain FUA2150]
ATGGACAAAATTAAATCTTTGCTGATCACCTTGCTCGCCGTCGCCGTCGTGATCATCGGCATTATATCCGGCGATTTTTT
CACTTCAGAACACCAGCCTTCAGGCCGGCAAAACGGCTCAGACTATGATGAAGTGCTGATTTTCCCGTCGGACCGCTATC
CTGAAACAGGCGCGCACATTCGAAAGGCCATCAAGAAAGGGCATTCTAAAATCTGTACGATCGACAGGGACGGAGCCGAC
GAACGCCGAAAGGAATCGTTAAAAGATGTTCCTTCCAAATCGGGCTATGACCGCGACGAGTGGCCGATGGCCATGTGCGA
AGAAGGCGGAACAGGTGCTTCCGTCGAGTATATCAGTCCTTCTGATAACCGTGGAGCAGGATCTTGGGTGGGCAATCAGG
TAAGCGATTATCCGGACGGCACGAAAATACTTTTCAAGATTAAATAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(53-143)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

63.946

99.324

0.635

Multiple sequence alignment