Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   AAVC22_RS08180 Genome accession   NZ_CP154902
Coordinates   1635710..1636663 (-) Length   317 a.a.
NCBI ID   WP_026580546.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain FUA2150     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1630710..1641663
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVC22_RS08160 (AAVC22_08160) - 1631453..1632874 (+) 1422 WP_026580547.1 MDR family MFS transporter -
  AAVC22_RS08165 (AAVC22_08165) - 1633056..1634003 (-) 948 WP_035337207.1 siderophore ABC transporter substrate-binding protein -
  AAVC22_RS08170 (AAVC22_08170) - 1634018..1634776 (-) 759 WP_020450172.1 ABC transporter ATP-binding protein -
  AAVC22_RS08175 (AAVC22_08175) - 1634776..1635720 (-) 945 WP_020450171.1 iron chelate uptake ABC transporter family permease subunit -
  AAVC22_RS08180 (AAVC22_08180) ceuB 1635710..1636663 (-) 954 WP_026580546.1 ABC transporter permease Machinery gene
  AAVC22_RS08185 (AAVC22_08185) - 1636941..1638302 (+) 1362 WP_020450169.1 aspartate kinase -
  AAVC22_RS08190 (AAVC22_08190) - 1638438..1640156 (+) 1719 WP_035337209.1 methyl-accepting chemotaxis protein -
  AAVC22_RS08195 (AAVC22_08195) - 1640189..1641616 (-) 1428 WP_035337212.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35107.47 Da        Isoelectric Point: 10.1004

>NTDB_id=994993 AAVC22_RS08180 WP_026580546.1 1635710..1636663(-) (ceuB) [Bacillus paralicheniformis strain FUA2150]
MKLRYLLLMLIILSISSIFIGVKELSPLDLFRFNEDEIQTLYISRIPRLISIVLAGMSLSICGLIMQQLTRNKFVSPTTA
GTMDWARLGVIIAIVLFSSAGIVVKILFAFVFALFGSFLFVKILDRIKFKDAIFIPLVGMMLGSVVSAISTFMAYQYNII
QNVNAWFEGNFSLVMKGRYELLFLSIPLVIIAYLFANKFTLAGMGESFSINLGLNYKRVVNIGLIIVSIISSVVILTVGT
LPFLGLIIPNIVSIYRGDHLKNSLPHTAVLGAVFVLFCDIAGRLVIYPYEISVGLMVGIIGSGVFLYLLLRRKAYAS

Nucleotide


Download         Length: 954 bp        

>NTDB_id=994993 AAVC22_RS08180 WP_026580546.1 1635710..1636663(-) (ceuB) [Bacillus paralicheniformis strain FUA2150]
ATGAAATTACGATACTTATTGCTAATGCTCATCATTCTTTCAATCAGCTCGATATTCATCGGCGTTAAGGAGCTTTCGCC
TCTTGATCTTTTCCGCTTTAACGAGGACGAAATTCAAACGCTTTACATAAGCAGAATTCCGCGCTTGATTAGCATCGTGC
TTGCGGGAATGAGCTTGAGCATTTGCGGGCTGATCATGCAGCAGCTAACGCGCAATAAATTTGTTTCACCGACCACCGCT
GGAACGATGGATTGGGCGAGGCTCGGTGTGATCATTGCGATCGTGCTTTTTTCGTCTGCAGGAATTGTGGTTAAAATACT
GTTTGCCTTTGTTTTTGCACTGTTTGGCAGTTTTTTGTTCGTCAAAATTTTGGACAGAATCAAGTTCAAAGATGCGATCT
TCATCCCTCTCGTCGGTATGATGCTCGGAAGTGTTGTCAGCGCCATCTCCACTTTCATGGCTTATCAGTACAATATCATT
CAAAACGTCAATGCATGGTTTGAAGGGAATTTTTCGCTGGTCATGAAGGGGAGGTATGAGCTCTTATTTCTGAGTATACC
GCTCGTTATCATTGCCTATCTGTTCGCCAATAAATTTACGTTGGCCGGGATGGGGGAGTCTTTTTCCATCAATCTTGGAT
TGAATTATAAGCGGGTGGTCAATATCGGATTGATCATCGTATCTATTATTTCGTCCGTCGTCATCCTGACGGTCGGCACG
CTTCCCTTTTTGGGATTGATCATCCCGAACATCGTGTCCATCTACAGGGGAGATCATTTGAAAAACAGCCTGCCTCATAC
GGCGGTTCTCGGAGCCGTTTTCGTCTTGTTTTGCGATATAGCGGGACGTCTCGTCATTTACCCGTACGAAATTTCGGTTG
GTTTGATGGTCGGCATCATCGGGAGCGGCGTTTTTCTTTACTTGCTTTTAAGGAGAAAAGCCTATGCGTCATAA

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(10-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.582

99.685

0.514

Multiple sequence alignment