Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   AAVC22_RS04770 Genome accession   NZ_CP154902
Coordinates   945667..946245 (-) Length   192 a.a.
NCBI ID   WP_020450829.1    Uniprot ID   -
Organism   Bacillus paralicheniformis strain FUA2150     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 940667..951245
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVC22_RS04750 (AAVC22_04750) - 942054..943829 (+) 1776 WP_025811741.1 S8 family peptidase -
  AAVC22_RS04755 (AAVC22_04755) lepB 943958..944476 (-) 519 WP_020450832.1 signal peptidase I -
  AAVC22_RS04760 (AAVC22_04760) - 944489..945100 (-) 612 WP_020450831.1 TVP38/TMEM64 family protein -
  AAVC22_RS04765 (AAVC22_04765) - 945308..945673 (+) 366 WP_020450830.1 hypothetical protein -
  AAVC22_RS04770 (AAVC22_04770) comK 945667..946245 (-) 579 WP_020450829.1 competence protein ComK Regulator
  AAVC22_RS04775 (AAVC22_04775) - 946518..946751 (+) 234 WP_020450828.1 IDEAL domain-containing protein -
  AAVC22_RS04780 (AAVC22_04780) - 946820..947677 (-) 858 WP_020450827.1 SDR family oxidoreductase -
  AAVC22_RS04785 (AAVC22_04785) - 947798..949348 (+) 1551 WP_043054265.1 FAD-dependent oxidoreductase -
  AAVC22_RS04790 (AAVC22_04790) - 949455..950747 (+) 1293 WP_025811745.1 globin-coupled sensor protein -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22377.61 Da        Isoelectric Point: 8.2478

>NTDB_id=994986 AAVC22_RS04770 WP_020450829.1 945667..946245(-) (comK) [Bacillus paralicheniformis strain FUA2150]
MSTEDMTKDTYEVNSSTMAVLPLGEGEKPASKILETDRTFLVNMKPFQIIERSCRYFGSSYAGRKAGTYEVIKVSHKPPI
MVDHSNNIFLFPTFSSTRPQCGWLSHAHVHEFCAAKYDNTFVTFVNGETLELPVSITSFENQVYRTAWLRTKFIDRIEGN
AMQKKQEFMLYPKEDRNQLIYEFILRELKKRY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=994986 AAVC22_RS04770 WP_020450829.1 945667..946245(-) (comK) [Bacillus paralicheniformis strain FUA2150]
ATGAGCACAGAGGATATGACAAAAGATACGTATGAAGTAAACAGTTCGACAATGGCTGTCCTGCCTCTGGGAGAGGGGGA
GAAACCCGCCTCAAAAATACTCGAGACCGACAGGACTTTCCTCGTCAATATGAAGCCGTTTCAGATCATCGAAAGAAGCT
GCCGCTATTTCGGGTCGAGCTATGCGGGGAGAAAAGCGGGCACATATGAGGTCATTAAAGTTTCCCATAAACCGCCGATC
ATGGTGGATCACTCAAACAATATTTTTCTTTTTCCCACATTTTCCTCAACTCGTCCTCAGTGCGGGTGGCTTTCCCATGC
GCATGTTCACGAGTTTTGCGCGGCAAAGTATGACAACACGTTTGTCACGTTTGTCAACGGGGAAACGCTGGAGCTGCCCG
TATCCATCACATCTTTTGAAAACCAGGTTTACCGAACGGCATGGCTGAGAACAAAATTTATCGACCGGATTGAAGGAAAC
GCCATGCAGAAGAAACAGGAATTTATGCTCTATCCGAAGGAAGACAGGAATCAGCTGATATACGAATTCATCCTCAGGGA
GCTGAAAAAGCGCTATTGA

Domains

Predicted by InterproScan.

ComK protein (ComK)

(9-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

68.617

97.917

0.672

Multiple sequence alignment