Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   AAYR26_RS12290 Genome accession   NZ_CP154901
Coordinates   2315670..2317400 (+) Length   576 a.a.
NCBI ID   WP_003183366.1    Uniprot ID   -
Organism   Bacillus licheniformis strain FUA2146     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2310670..2322400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAYR26_RS12265 (AAYR26_12275) - 2310906..2311166 (+) 261 WP_011198110.1 exodeoxyribonuclease VII small subunit -
  AAYR26_RS12270 (AAYR26_12280) - 2311156..2312046 (+) 891 WP_003183374.1 polyprenyl synthetase family protein -
  AAYR26_RS12275 (AAYR26_12285) dxs 2312280..2314181 (+) 1902 WP_003183372.1 1-deoxy-D-xylulose-5-phosphate synthase -
  AAYR26_RS12280 (AAYR26_12290) - 2314178..2315023 (+) 846 WP_003183371.1 TlyA family RNA methyltransferase -
  AAYR26_RS12285 (AAYR26_12295) argR 2315189..2315638 (+) 450 WP_003183369.1 transcriptional regulator ArgR -
  AAYR26_RS12290 (AAYR26_12300) recN 2315670..2317400 (+) 1731 WP_003183366.1 DNA repair protein RecN Machinery gene
  AAYR26_RS12295 (AAYR26_12305) spoIVB 2317550..2318866 (+) 1317 WP_044051837.1 SpoIVB peptidase -
  AAYR26_RS12300 (AAYR26_12310) spo0A 2319156..2319956 (+) 801 WP_003183361.1 sporulation transcription factor Spo0A Regulator
  AAYR26_RS12305 (AAYR26_12315) - 2320329..2320625 (+) 297 WP_003183359.1 antimicrobial peptide LCI -
  AAYR26_RS12310 (AAYR26_12320) - 2320754..2321137 (+) 384 WP_003183357.1 serine acetyltransferase -
  AAYR26_RS12315 (AAYR26_12325) - 2321292..2321624 (-) 333 WP_224990910.1 hypothetical protein -
  AAYR26_RS12320 (AAYR26_12330) - 2321623..2321943 (+) 321 WP_034291702.1 hypothetical protein -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64524.32 Da        Isoelectric Point: 4.7726

>NTDB_id=994936 AAYR26_RS12290 WP_003183366.1 2315670..2317400(+) (recN) [Bacillus licheniformis strain FUA2146]
MLAELSIKNFAIIEELTVSFEKGLTVLTGETGAGKSIIIDAVSLLVGGRGSSEYVRYGEKRAELEGLFLLDGGHPVFDLC
TELGIEASDDMIVMRRDINANGKSICRVNGKLVTIAALREVGRLLLDIHGQHDNQLLMEDEHHLQLLDRFAGEEIENALK
AYQEVYSRYMDVMKKVKELSESEQEMAHRLDLIQFQLDEIESANLEPKEDELLQEERRQIANFEKIYEALQNAYNALRNE
QAGLDWVGMASSELENVSGINEGLNKVSESVANAYYILEDSTFQIRNMLDELEYDPERLDYIESRLNEIKQLKRKYGATV
EDIQAYSAKIEEEIDRIENRDSHLQALKSRLESIGKDVAIEAANVSEIRKKWAEKLAKQIQQELKDLYMEKSTFDTEFHV
KKAERDDDAPVVNGMPVQLTKHGIDTVRFLISTNTGEPLKSLSKVASGGELSRIMLAMKSIFSAQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHRVSIGSQVLCITHLPQVAAMADTHLLITKQSKDGRTTTSVTPLSKQEKIAEIGRMIAGVEVTDLTKR
HAKELLNQAKLVKTSG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=994936 AAYR26_RS12290 WP_003183366.1 2315670..2317400(+) (recN) [Bacillus licheniformis strain FUA2146]
TTGTTAGCTGAATTATCGATCAAAAACTTTGCGATTATCGAAGAATTAACCGTTTCTTTTGAAAAAGGGCTGACGGTTCT
AACCGGTGAAACAGGTGCCGGAAAATCGATCATCATCGACGCCGTCTCTTTGCTTGTCGGAGGCCGCGGATCGTCCGAAT
ATGTCAGGTATGGCGAAAAAAGGGCCGAATTGGAAGGGCTTTTCCTCCTTGACGGCGGCCATCCGGTTTTTGATTTGTGC
ACAGAGCTGGGGATTGAAGCCTCGGACGACATGATCGTCATGAGAAGAGATATTAACGCAAACGGCAAAAGCATCTGCCG
CGTCAATGGAAAACTTGTCACCATTGCCGCATTGCGGGAAGTCGGCAGACTGCTGCTTGACATTCACGGGCAGCACGACA
ATCAGCTGCTGATGGAGGACGAGCACCATCTTCAGCTTCTGGACAGGTTCGCAGGAGAAGAAATCGAGAATGCTTTAAAA
GCGTATCAGGAAGTTTACAGCCGCTACATGGATGTCATGAAGAAGGTGAAAGAGCTTTCTGAAAGCGAGCAGGAAATGGC
TCACAGGCTCGATTTAATACAGTTCCAGCTTGACGAAATCGAATCAGCAAACCTTGAGCCGAAAGAGGACGAGCTTCTTC
AGGAAGAGCGCCGTCAAATTGCAAATTTCGAAAAAATATACGAAGCGCTGCAAAATGCCTATAATGCGCTTCGCAATGAG
CAGGCCGGGCTTGACTGGGTCGGCATGGCTTCAAGCGAGCTTGAAAACGTCTCAGGCATTAATGAAGGGCTCAATAAAGT
ATCTGAATCGGTAGCCAACGCTTACTACATTCTCGAAGATTCAACCTTTCAGATCAGAAATATGCTGGATGAACTCGAAT
ACGACCCCGAGCGCCTCGATTATATCGAATCGCGTTTAAACGAAATCAAACAGCTGAAACGCAAATACGGCGCTACTGTC
GAAGACATCCAAGCTTATTCGGCTAAGATAGAGGAAGAAATCGACCGGATCGAAAACCGGGACAGCCACTTGCAGGCTTT
AAAATCACGACTCGAATCAATCGGCAAGGATGTGGCGATTGAAGCAGCCAATGTGTCCGAAATCAGAAAAAAATGGGCGG
AAAAGCTGGCCAAACAGATTCAGCAGGAATTGAAAGATCTGTATATGGAAAAATCGACATTTGATACGGAATTTCATGTG
AAAAAAGCGGAACGGGATGATGATGCACCCGTCGTCAACGGAATGCCTGTTCAGCTCACAAAGCACGGCATTGACACCGT
TCGTTTCCTGATCTCCACAAACACGGGAGAACCGCTTAAATCCTTGTCAAAGGTTGCTTCAGGAGGAGAGCTCTCAAGAA
TCATGCTGGCGATGAAAAGCATTTTCTCCGCTCAGCAGGATGTTACATCGATCATTTTCGATGAAGTGGACACTGGTGTA
AGCGGAAGAGTCGCGCAGGCGATCGCTGAAAAAATACACCGCGTCTCTATCGGCTCTCAAGTTTTATGCATTACCCACTT
GCCGCAGGTGGCCGCGATGGCTGACACCCACCTTTTGATCACGAAACAGTCGAAAGACGGGAGAACAACAACAAGCGTCA
CACCTTTGTCAAAACAGGAAAAAATAGCGGAAATCGGCCGGATGATTGCCGGCGTTGAAGTAACGGATTTGACGAAGCGC
CATGCGAAAGAACTTTTAAATCAAGCTAAGCTAGTCAAAACCAGCGGATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

81.25

100

0.813

Multiple sequence alignment