Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   AAVC70_RS08080 Genome accession   NZ_CP154898
Coordinates   1375082..1375504 (-) Length   140 a.a.
NCBI ID   WP_269467498.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain Fad 97     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1370082..1380504
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AAVC70_RS08045 (AAVC70_08045) fliW 1370172..1370603 (-) 432 WP_007407475.1 flagellar assembly protein FliW -
  AAVC70_RS08050 (AAVC70_08050) - 1370633..1371202 (-) 570 WP_014471091.1 DUF6470 family protein -
  AAVC70_RS08055 (AAVC70_08055) flgL 1371294..1372211 (-) 918 WP_013353778.1 flagellar hook-associated protein FlgL -
  AAVC70_RS08060 (AAVC70_08060) flgK 1372223..1373740 (-) 1518 WP_345816398.1 flagellar hook-associated protein FlgK -
  AAVC70_RS08065 (AAVC70_08065) - 1373756..1374238 (-) 483 WP_013353780.1 flagellar protein FlgN -
  AAVC70_RS08070 (AAVC70_08070) flgM 1374253..1374519 (-) 267 WP_013353781.1 flagellar biosynthesis anti-sigma factor FlgM -
  AAVC70_RS08075 (AAVC70_08075) - 1374589..1375008 (-) 420 WP_013353782.1 TIGR03826 family flagellar region protein -
  AAVC70_RS08080 (AAVC70_08080) comFC 1375082..1375504 (-) 423 WP_269467498.1 phosphoribosyltransferase family protein Machinery gene
  AAVC70_RS08085 (AAVC70_08085) - 1375601..1375759 (-) 159 Protein_1470 double zinc ribbon domain-containing protein -
  AAVC70_RS08090 (AAVC70_08090) - 1375777..1376061 (-) 285 WP_013353784.1 competence protein ComFB -
  AAVC70_RS08095 (AAVC70_08095) comFA 1376120..1377505 (-) 1386 WP_061573632.1 DEAD/DEAH box helicase Machinery gene
  AAVC70_RS08100 (AAVC70_08100) - 1377612..1378460 (-) 849 WP_013353786.1 DegV family protein -
  AAVC70_RS08105 (AAVC70_08105) degU 1378557..1379246 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  AAVC70_RS08110 (AAVC70_08110) degS 1379323..1380486 (-) 1164 WP_061573631.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 140 a.a.        Molecular weight: 15269.62 Da        Isoelectric Point: 10.3581

>NTDB_id=994845 AAVC70_RS08080 WP_269467498.1 1375082..1375504(-) (comFC) [Bacillus amyloliquefaciens strain Fad 97]
MARFKFRGDTKIIQTFERDFTAGFKAAYPANTHILVPIPLSPERLAERGFNQSELLASLLGMPVISPLIRLNNEKQSKKS
KTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAGALLTAGKALSVSSFTLIRS

Nucleotide


Download         Length: 423 bp        

>NTDB_id=994845 AAVC70_RS08080 WP_269467498.1 1375082..1375504(-) (comFC) [Bacillus amyloliquefaciens strain Fad 97]
TTGGCCCGGTTTAAATTCAGGGGTGATACGAAAATCATTCAAACATTTGAACGTGATTTTACTGCCGGCTTTAAAGCGGC
ATATCCGGCAAATACACATATCCTCGTCCCTATTCCGCTGAGCCCCGAACGGCTGGCGGAGCGCGGATTTAATCAATCCG
AGCTGCTGGCCTCGCTGCTCGGAATGCCCGTCATTTCCCCCCTCATCCGACTGAACAATGAAAAACAATCCAAAAAGAGC
AAAACAGAAAGGCTCTCCGCAGAAAAAAAGTTTTCAGCTGCCGAAAACTCCGCCGAAGGTATGAACGTCATTTTAATAGA
CGATATTTATACGACGGGCGCCACACTGCATCAAGCTGCCGGAGCTCTGCTGACAGCAGGCAAAGCGTTATCGGTCTCCT
CTTTTACTTTAATCAGGAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(77-138)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

65.714

100

0.657
  comFC/cflB Streptococcus mitis NCTC 12261

37.41

99.286

0.371
  comFC/cflB Streptococcus mitis SK321

36.691

99.286

0.364

Multiple sequence alignment